MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:51.9 nTPM
HPA:51.9 nTPM
GTEx:45.0 nTPM
FANTOM5:23.5 Scaled Tags Per Million
Pig:37.1 nTPM
Mouse:13.9 nTPM
Allen mouse:2.5 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 51.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 49.7
2019 Male, age 18, unknown 51.1
1870 Female, age 42, unknown 50.5
1833 Male, age 53, unknown 50.0
2411 Female, age 72, unknown 50.0
2219 Male, age 76, both hemispheres 49.8
2828 Female, age 72, unknown 49.8
1827 Male, age 72, unknown 49.7
2666 Male, age 74, left hemisphere 49.6
1830 Male, age 51, unknown 49.4
2586 Male, age 75, left hemisphere 46.8
Dorsal raphe nucleus
nTPM: 49.8
1828 Male, age 53, unknown 50.3
2298 Female, age 72, unknown 50.0
2750 Male, age 76, both hemispheres 50.0
2016 Female, age 72, unknown 49.8
2047 Male, age 72, unknown 48.8
Inferior colliculus
nTPM: 50.6
2849 Male, age 72, unknown 51.0
1848 Female, age 42, unknown 50.6
1890 Male, age 53, unknown 50.6
2097 Female, age 72, unknown 50.3
Median raphe nucleus
nTPM: 51.9
2220 Male, age 76, midline 51.9
Pedunculopontine tegmental nucleus
nTPM: 51.8
2338 Male, age 61, both hemispheres 54.5
2334 Male, age 80, both hemispheres 51.3
1921 Female, age 85, both hemispheres 49.7
Periaquaductal grey, anterior
nTPM: 48.9
1795 Male, age 51, unknown 49.3
1947 Male, age 18, unknown 49.1
2502 Female, age 75, unknown 48.4
Periaquaductal grey, dorsal
nTPM: 50.3
2850 Male, age 76, both hemispheres 52.3
1831 Male, age 72, unknown 50.2
1840 Male, age 53, unknown 49.4
2464 Female, age 72, unknown 49.1
Periaquaductal grey, lateral
nTPM: 50.5
2140 Male, age 76, both hemispheres 51.0
2272 Male, age 74, both hemispheres 51.0
2053 Male, age 18, unknown 49.4
Pretectal area
nTPM: 51.0
2273 Male, age 74, both hemispheres 53.6
1817 Female, age 42, unknown 52.6
1944 Female, age 72, unknown 52.4
1816 Male, age 51, unknown 51.6
1815 Male, age 53, unknown 51.5
2007 Male, age 72, unknown 51.3
2667 Female, age 75, unknown 50.8
2224 Female, age 72, unknown 50.1
2825 Male, age 18, unknown 49.1
2407 Male, age 75, both hemispheres 49.0
2316 Male, age 76, right hemisphere 48.5
Red nucleus
nTPM: 50.8
1865 Male, age 51, unknown 51.5
2503 Female, age 72, unknown 51.5
2725 Female, age 75, unknown 51.4
2785 Male, age 18, unknown 51.3
2823 Male, age 76, right hemisphere 51.3
1821 Female, age 72, unknown 50.7
2227 Male, age 72, unknown 50.7
1954 Female, age 42, unknown 50.6
1904 Male, age 53, unknown 50.5
2588 Male, age 74, left hemisphere 50.3
2769 Male, age 72, unknown 50.3
2584 Male, age 75, left hemisphere 48.9
Substantia nigra
nTPM: 50.7
1889 Female, age 72, unknown 51.9
2409 Female, age 72, unknown 51.9
2590 Female, age 75, unknown 51.7
2241 Male, age 72, unknown 50.7
2699 Male, age 18, unknown 50.5
1851 Male, age 51, unknown 50.3
2665 Male, age 74, both hemispheres 50.3
1916 Female, age 42, unknown 50.2
1941 Male, age 53, unknown 50.1
2583 Male, age 75, right hemisphere 49.1
Superior colliculus
nTPM: 50.3
1913 Female, age 42, unknown 52.3
2087 Female, age 72, unknown 51.0
2261 Male, age 18, unknown 50.9
2587 Male, age 74, left hemisphere 50.8
1796 Male, age 53, unknown 50.6
1995 Male, age 72, unknown 50.6
1839 Male, age 51, unknown 50.1
1895 Male, age 76, right hemisphere 49.5
2668 Female, age 75, unknown 49.3
2664 Male, age 75, both hemispheres 47.5
Ventral tegmental area
nTPM: 50.5
2223 Female, age 72, unknown 51.5
2218 Male, age 76, both hemispheres 51.0
2410 Female, age 72, unknown 50.6
1915 Female, age 42, unknown 50.5
2021 Male, age 53, unknown 50.0
1942 Male, age 51, unknown 49.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 45.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 45.0
Samples: 139

Max nTPM: 94.9
Min nTPM: 19.0
Std nTPM: 11.1
Median nTPM: 43.2
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 94.9
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 89.9
GTEX-XMD1-0011-R2B-SM-4AT5N 60-69 years, male 73.1
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 68.3
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 65.0
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 64.3
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 62.9
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 62.5
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 62.5
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 62.1
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 62.1
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 23.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 23.5
FF:10158-103A5 76 years, female 23.5

MIDBRAIN - Pig RNA-seqi
Average nTPM 37.1
Pig sample Sample description nTPM
Midbrain
nTPM: 35.8
Samples: 4

Max nTPM: 39.3
Min nTPM: 29.8
Sample A Female 39.3
Sample B Female 29.8
Sample C Male 36.3
Sample D Male 37.9
Periaqueductal gray
nTPM: 25.1
Samples: 3

Max nTPM: 27.3
Min nTPM: 21.7
Sample B Female 26.3
Sample C Male 27.3
Sample D Male 21.7
Substantia nigra
nTPM: 28.9
Samples: 4

Max nTPM: 41.7
Min nTPM: 23.6
Sample A Female 41.7
Sample B Female 24.4
Sample C Male 25.9
Sample D Male 23.6
Superior colliculi
nTPM: 37.1
Samples: 4

Max nTPM: 51.4
Min nTPM: 25.3
Sample A Female 51.4
Sample B Female 25.3
Sample C Male 41.7
Sample D Male 29.9

MIDBRAIN - Mouse RNA-seqi
Average nTPM 13.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 13.9
Samples: 4

Max nTPM: 14.6
Min nTPM: 13.4
Sample A Male 13.7
Sample B Male 14.6
Sample C Female 13.4
Sample D Female 14.0

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 2.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.5
69114902 Antisense, RP_050317_02_C08, Mouse strain C57BL/6J (56 days, male) 2.5

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.