MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:1765.4 nTPM
HPA:1765.4 nTPM
GTEx:1922.2 nTPM
FANTOM5:407.0 Scaled Tags Per Million
Pig:1696.3 nTPM
Mouse:2198.6 nTPM

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 1765.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 1505.0
2219 Male, age 76, both hemispheres 1592.6
1870 Female, age 42, unknown 1570.2
2411 Female, age 72, unknown 1538.5
1827 Male, age 72, unknown 1525.1
2828 Female, age 72, unknown 1510.3
1833 Male, age 53, unknown 1506.7
1830 Male, age 51, unknown 1475.3
2019 Male, age 18, unknown 1470.1
2666 Male, age 74, left hemisphere 1448.1
2586 Male, age 75, left hemisphere 1413.1
Dorsal raphe nucleus
nTPM: 1580.2
2298 Female, age 72, unknown 1706.1
2047 Male, age 72, unknown 1601.9
2750 Male, age 76, both hemispheres 1584.7
1828 Male, age 53, unknown 1523.2
2016 Female, age 72, unknown 1485.2
Inferior colliculus
nTPM: 1487.8
2097 Female, age 72, unknown 1533.7
1848 Female, age 42, unknown 1487.7
1890 Male, age 53, unknown 1470.8
2849 Male, age 72, unknown 1459.2
Median raphe nucleus
nTPM: 1765.4
2220 Male, age 76, midline 1765.4
Pedunculopontine tegmental nucleus
nTPM: 1609.7
2334 Male, age 80, both hemispheres 1625.2
1921 Female, age 85, both hemispheres 1607.8
2338 Male, age 61, both hemispheres 1596.0
Periaquaductal grey, anterior
nTPM: 1534.9
1947 Male, age 18, unknown 1590.7
1795 Male, age 51, unknown 1513.4
2502 Female, age 75, unknown 1500.7
Periaquaductal grey, dorsal
nTPM: 1466.7
2850 Male, age 76, both hemispheres 1522.6
1840 Male, age 53, unknown 1492.4
1831 Male, age 72, unknown 1450.5
2464 Female, age 72, unknown 1401.3
Periaquaductal grey, lateral
nTPM: 1499.0
2272 Male, age 74, both hemispheres 1577.2
2053 Male, age 18, unknown 1474.2
2140 Male, age 76, both hemispheres 1445.4
Pretectal area
nTPM: 1541.6
2224 Female, age 72, unknown 1615.6
2273 Male, age 74, both hemispheres 1600.0
2667 Female, age 75, unknown 1591.5
1944 Female, age 72, unknown 1574.7
1817 Female, age 42, unknown 1568.2
2007 Male, age 72, unknown 1535.4
1816 Male, age 51, unknown 1533.8
1815 Male, age 53, unknown 1519.9
2825 Male, age 18, unknown 1496.7
2407 Male, age 75, both hemispheres 1494.9
2316 Male, age 76, right hemisphere 1427.3
Red nucleus
nTPM: 1509.2
1821 Female, age 72, unknown 1637.0
1865 Male, age 51, unknown 1573.1
1904 Male, age 53, unknown 1568.7
2503 Female, age 72, unknown 1556.0
1954 Female, age 42, unknown 1554.8
2769 Male, age 72, unknown 1512.2
2227 Male, age 72, unknown 1507.8
2725 Female, age 75, unknown 1499.5
2785 Male, age 18, unknown 1495.2
2823 Male, age 76, right hemisphere 1428.9
2584 Male, age 75, left hemisphere 1398.9
2588 Male, age 74, left hemisphere 1378.6
Substantia nigra
nTPM: 1593.0
1916 Female, age 42, unknown 1799.3
1851 Male, age 51, unknown 1682.8
2699 Male, age 18, unknown 1660.2
1941 Male, age 53, unknown 1626.4
1889 Female, age 72, unknown 1614.9
2241 Male, age 72, unknown 1608.5
2409 Female, age 72, unknown 1538.2
2665 Male, age 74, both hemispheres 1494.3
2590 Female, age 75, unknown 1466.6
2583 Male, age 75, right hemisphere 1439.1
Superior colliculus
nTPM: 1506.6
2668 Female, age 75, unknown 1614.2
2587 Male, age 74, left hemisphere 1558.3
1796 Male, age 53, unknown 1541.6
1913 Female, age 42, unknown 1513.0
2261 Male, age 18, unknown 1494.5
1895 Male, age 76, right hemisphere 1493.5
2087 Female, age 72, unknown 1492.9
1995 Male, age 72, unknown 1468.6
1839 Male, age 51, unknown 1458.5
2664 Male, age 75, both hemispheres 1431.1
Ventral tegmental area
nTPM: 1599.3
2218 Male, age 76, both hemispheres 1698.4
1915 Female, age 42, unknown 1690.1
2223 Female, age 72, unknown 1590.3
2410 Female, age 72, unknown 1580.4
1942 Male, age 51, unknown 1542.2
2021 Male, age 53, unknown 1494.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 1922.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 1922.2
Samples: 139

Max nTPM: 4427.3
Min nTPM: 1078.4
Std nTPM: 534.2
Median nTPM: 1783.9
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 4427.3
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 3459.9
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 3399.7
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 3317.9
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 3230.2
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 3167.7
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 3122.6
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 3084.0
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 2954.3
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 2866.2
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 2770.5
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 407.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 407.0
FF:10158-103A5 76 years, female 407.0

MIDBRAIN - Pig RNA-seqi
Average nTPM 1696.3
Pig sample Sample description nTPM
Midbrain
nTPM: 1607.5
Samples: 4

Max nTPM: 1943.7
Min nTPM: 1317.1
Sample A Female 1943.7
Sample B Female 1618.8
Sample C Male 1550.5
Sample D Male 1317.1
Periaqueductal gray
nTPM: 1349.8
Samples: 3

Max nTPM: 1456.7
Min nTPM: 1176.7
Sample B Female 1456.7
Sample C Male 1415.9
Sample D Male 1176.7
Substantia nigra
nTPM: 1593.2
Samples: 4

Max nTPM: 2264.7
Min nTPM: 1195.0
Sample A Female 2264.7
Sample B Female 1411.0
Sample C Male 1502.0
Sample D Male 1195.0
Superior colliculi
nTPM: 1696.3
Samples: 4

Max nTPM: 2060.7
Min nTPM: 1456.2
Sample A Female 2060.7
Sample B Female 1497.6
Sample C Male 1770.6
Sample D Male 1456.2

MIDBRAIN - Mouse RNA-seqi
Average nTPM 2198.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 2198.6
Samples: 4

Max nTPM: 2321.0
Min nTPM: 2098.6
Sample A Male 2254.6
Sample B Male 2098.6
Sample C Female 2120.1
Sample D Female 2321.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.