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BRAIN RETINA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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Brain proteome
Eye
Retina
RETINA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:566.0 nTPM
GTEx:566.0 nTPM
FANTOM5:387.1 Scaled Tags Per Million
Pig:555.7 nTPM
Mouse:3825.0 nTPM

RETINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 566.0
GTEx sample id Sample description nTPM
Retina
Average nTPM: 566.0
Samples: 105

Max nTPM: 924.1
Min nTPM: 158.0
Std nTPM: 155.8
Median nTPM:
376_1 75 years, female 924.1
177_1 74 years, male 890.6
377_1 82 years, female 890.4
406_1 79 years, male 890.3
163_1 78 years, male 835.7
394_1 75 years, female 824.6
506_1 65 years, male 819.9
321_1 62 years, female 811.1
389_1 86 years, female 796.3
99_1 64 years, male 791.1
189_1 76 years, male 776.9
243_1 75 years, male 774.7
425_1 59 years, female 758.1
319_1 81 years, male 756.4
404_1 82 years, female 753.1
4_1 88 years, female 744.2
172_1 72 years, female 736.1
517_1 88 years, male 735.6
316_1 62 years, male 719.0
335_1 73 years, female 706.9
251_1 78 years, male 699.0
246_1 77 years, male 694.5
351_1 91 years, male 692.0
145_1 84 years, male 691.0
480_1 63 years, male 675.3
254_1 77 years, female 671.5
526_1 61 years, male 659.5
115_1 83 years, male 650.6
503_1 68 years, male 649.1
126_1 63 years, male 642.8
347_1 72 years, male 641.3
9_1 66 years, female 639.7
2_1 77 years, female 638.2
317_1 60 years, male 635.0
405_1 91 years, male 632.1
349_1 83 years, male 625.7
229_1 69 years, female 625.6
265_1 87 years, male 616.5
468_1 89 years, male 613.6
266_1 85 years, male 609.7
218_1 71 years, female 599.8
137_1 83 years, male 598.9
264_1 73 years, female 594.7
356_1 87 years, female 591.5
452_1 88 years, female 590.7
499_1 55 years, female 590.4
353_1 82 years, female 587.0
384_1 83 years, male 582.4
386_1 76 years, male 572.9
217_1 76 years, male 572.7
518_1 75 years, female 569.8
286_1 68 years, female 566.9
291_1 76 years, male 564.8
18_1 88 years, male 562.1
292_1 71 years, male 561.2
396_1 62 years, male 558.7
354_1 81 years, female 557.7
324_1 76 years, male 552.4
153_1 70 years, female 549.1
320_1 89 years, female 545.7
379_1 60 years, male 545.0
288_1 66 years, female 543.2
350_1 84 years, female 541.8
501_1 88 years, male 536.6
237_1 82 years, male 528.6
295_1 61 years, female 525.6
17_1 71 years, male 510.9
318_1 68 years, male 506.7
6_1 73 years, female 500.5
293_1 68 years, female 496.9
314_1 67 years, male 493.1
120_1 70 years, female 487.6
173_1 67 years, male 487.2
447_1 81 years, male 475.7
322_1 76 years, male 473.7
109_1 81 years, female 458.1
375_1 74 years, female 453.6
315_1 62 years, female 449.1
32_1 67 years, male 433.1
414_1 84 years, female 431.7
117_1 61 years, male 430.2
355_1 70 years, female 428.8
42_1 85 years, male 426.3
352_1 62 years, male 423.7
81_1 67 years, male 421.6
415_1 77 years, female 419.5
41_1 94 years, female 413.2
495_1 57 years, female 412.7
35_1 74 years, female 406.2
307_1 66 years, female 404.5
348_1 84 years, male 401.0
139_1 64 years, female 399.9
466_1 57 years, female 397.5
308_1 70 years, female 382.3
142_1 61 years, female 362.0
119_1 70 years, female 358.4
313_1 79 years, female 358.3
162_1 79 years, female 345.9
311_1 78 years, male 340.3
413_1 59 years, female 338.4
89_1 63 years, male 306.4
43_1 64 years, female 303.4
490_1 67 years, female 254.3
149_1 88 years, male 247.0
491_1 89 years, female 158.0
Show allShow less

RETINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 387.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Retina
Scaled Tags Per Million: 387.1
FF:10030-101E3 24-65 years, mixed 387.1

RETINA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 555.7
Pig sample Sample description nTPM
Retina
nTPM: 555.7
Samples: 4

Max nTPM: 671.3
Min nTPM: 501.5
Sample A Female 503.9
Sample B Female 671.3
Sample C Male 546.0
Sample D Male 501.5

RETINA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 3825.0
Mouse sample Sample description nTPM
Retina
nTPM: 3825.0
Samples: 4

Max nTPM: 4101.2
Min nTPM: 3595.8
Sample A Male 3938.3
Sample B Male 3595.8
Sample C Female 4101.2
Sample D Female 3664.7

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by the Knut & Alice Wallenberg Foundation.