MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:84.0 nTPM
HPA:84.0 nTPM
GTEx:136.3 nTPM
FANTOM5:294.1 Scaled Tags Per Million
Pig:42.6 nTPM
Mouse:12.8 nTPM
Allen mouse:2.3 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 84.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 56.4
2219 Male, age 76, both hemispheres 115.1
2586 Male, age 75, left hemisphere 59.6
1833 Male, age 53, unknown 58.6
2666 Male, age 74, left hemisphere 57.2
2411 Female, age 72, unknown 55.7
1830 Male, age 51, unknown 46.8
2828 Female, age 72, unknown 45.2
1870 Female, age 42, unknown 44.5
2019 Male, age 18, unknown 43.1
1827 Male, age 72, unknown 38.7
Dorsal raphe nucleus
nTPM: 71.2
2298 Female, age 72, unknown 118.9
2016 Female, age 72, unknown 88.5
1828 Male, age 53, unknown 58.2
2750 Male, age 76, both hemispheres 48.1
2047 Male, age 72, unknown 42.2
Inferior colliculus
nTPM: 52.3
2097 Female, age 72, unknown 60.1
2849 Male, age 72, unknown 54.6
1890 Male, age 53, unknown 48.0
1848 Female, age 42, unknown 46.6
Median raphe nucleus
nTPM: 54.8
2220 Male, age 76, midline 54.8
Pedunculopontine tegmental nucleus
nTPM: 59.1
2338 Male, age 61, both hemispheres 72.6
2334 Male, age 80, both hemispheres 71.3
1921 Female, age 85, both hemispheres 33.4
Periaquaductal grey, anterior
nTPM: 77.7
1795 Male, age 51, unknown 130.7
1947 Male, age 18, unknown 52.1
2502 Female, age 75, unknown 50.2
Periaquaductal grey, dorsal
nTPM: 82.3
1831 Male, age 72, unknown 155.4
2464 Female, age 72, unknown 60.3
2850 Male, age 76, both hemispheres 57.2
1840 Male, age 53, unknown 56.4
Periaquaductal grey, lateral
nTPM: 84.0
2272 Male, age 74, both hemispheres 128.4
2053 Male, age 18, unknown 63.0
2140 Male, age 76, both hemispheres 60.8
Pretectal area
nTPM: 56.9
2224 Female, age 72, unknown 108.3
2273 Male, age 74, both hemispheres 103.0
2667 Female, age 75, unknown 56.1
2407 Male, age 75, both hemispheres 52.1
2825 Male, age 18, unknown 51.7
2316 Male, age 76, right hemisphere 48.1
1815 Male, age 53, unknown 45.4
1817 Female, age 42, unknown 44.9
2007 Male, age 72, unknown 41.5
1944 Female, age 72, unknown 40.4
1816 Male, age 51, unknown 34.4
Red nucleus
nTPM: 49.3
1904 Male, age 53, unknown 71.3
2785 Male, age 18, unknown 54.6
2725 Female, age 75, unknown 54.0
2584 Male, age 75, left hemisphere 52.9
1821 Female, age 72, unknown 51.3
2227 Male, age 72, unknown 50.6
2769 Male, age 72, unknown 50.4
1865 Male, age 51, unknown 46.9
2503 Female, age 72, unknown 44.5
2588 Male, age 74, left hemisphere 41.3
2823 Male, age 76, right hemisphere 37.3
1954 Female, age 42, unknown 36.4
Substantia nigra
nTPM: 55.8
2699 Male, age 18, unknown 96.0
1851 Male, age 51, unknown 75.6
2590 Female, age 75, unknown 68.3
2665 Male, age 74, both hemispheres 56.5
2583 Male, age 75, right hemisphere 53.0
1941 Male, age 53, unknown 45.0
1889 Female, age 72, unknown 44.1
2241 Male, age 72, unknown 43.4
1916 Female, age 42, unknown 40.8
2409 Female, age 72, unknown 35.1
Superior colliculus
nTPM: 59.2
1995 Male, age 72, unknown 93.6
1913 Female, age 42, unknown 76.7
2587 Male, age 74, left hemisphere 70.1
1796 Male, age 53, unknown 69.5
2261 Male, age 18, unknown 54.6
2668 Female, age 75, unknown 47.4
2664 Male, age 75, both hemispheres 46.9
1839 Male, age 51, unknown 46.3
2087 Female, age 72, unknown 44.5
1895 Male, age 76, right hemisphere 42.5
Ventral tegmental area
nTPM: 60.1
1915 Female, age 42, unknown 84.9
2223 Female, age 72, unknown 65.4
2021 Male, age 53, unknown 58.9
1942 Male, age 51, unknown 55.4
2410 Female, age 72, unknown 48.7
2218 Male, age 76, both hemispheres 47.2

MIDBRAIN - GTEx RNA-seqi
Average nTPM 136.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 136.3
Samples: 139

Max nTPM: 891.8
Min nTPM: 11.4
Std nTPM: 133.7
Median nTPM: 91.5
GTEX-13SLX-0011-R2b-SM-5S2VP 50-59 years, female 891.8
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 524.3
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 520.3
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 507.1
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 488.7
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 488.0
GTEX-145LS-0011-R2a-SM-5PNZI 60-69 years, female 451.4
GTEX-11GSP-0011-R2b-SM-9QEGE 60-69 years, female 447.1
GTEX-WHSE-0011-R2A-SM-3P5ZL 20-29 years, male 432.4
GTEX-16Z82-0011-R2b-SM-79OK9 60-69 years, male 378.7
GTEX-T2IS-0011-R2A-SM-32QPF 20-29 years, female 377.7
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 294.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 294.1
FF:10158-103A5 76 years, female 294.1

MIDBRAIN - Pig RNA-seqi
Average nTPM 42.6
Pig sample Sample description nTPM
Midbrain
nTPM: 22.2
Samples: 4

Max nTPM: 35.0
Min nTPM: 8.8
Sample A Female 24.8
Sample B Female 8.8
Sample C Male 35.0
Sample D Male 20.1
Periaqueductal gray
nTPM: 9.7
Samples: 3

Max nTPM: 15.5
Min nTPM: 6.0
Sample B Female 6.0
Sample C Male 15.5
Sample D Male 7.5
Substantia nigra
nTPM: 34.8
Samples: 4

Max nTPM: 51.4
Min nTPM: 26.6
Sample A Female 34.1
Sample B Female 51.4
Sample C Male 27.2
Sample D Male 26.6
Superior colliculi
nTPM: 42.6
Samples: 4

Max nTPM: 50.7
Min nTPM: 34.5
Sample A Female 50.7
Sample B Female 49.6
Sample C Male 35.5
Sample D Male 34.5

MIDBRAIN - Mouse RNA-seqi
Average nTPM 12.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 12.8
Samples: 4

Max nTPM: 16.8
Min nTPM: 9.3
Sample A Male 14.7
Sample B Male 16.8
Sample C Female 9.3
Sample D Female 10.5

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 2.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.3
459 Antisense, RP_Baylor_253909, Mouse strain C57BL/6J (56 days, male) 2.5
80342219 Antisense, RP_080109_01_B10, Mouse strain C57BL/6J (56 days, male) 2.0
79912554 Antisense, RP_080109_01_B10, Mouse strain C57BL/6J (56 days, male) 1.5

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.