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BRAIN RETINA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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Brain proteome
Eye
Retina
RETINA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:233.3 nTPM
GTEx:233.3 nTPM
FANTOM5:772.7 Scaled Tags Per Million
Pig:10.9 nTPM
Mouse:20.5 nTPM

RETINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 233.3
GTEx sample id Sample description nTPM
Retina
Average nTPM: 233.3
Samples: 105

Max nTPM: 597.3
Min nTPM: 7.5
Std nTPM: 152.9
Median nTPM:
452_1 88 years, female 597.3
389_1 86 years, female 566.4
137_1 83 years, male 552.4
353_1 82 years, female 548.8
295_1 61 years, female 541.4
349_1 83 years, male 536.6
394_1 75 years, female 511.0
351_1 91 years, male 507.6
4_1 88 years, female 498.5
386_1 76 years, male 479.8
189_1 76 years, male 470.6
376_1 75 years, female 453.5
354_1 81 years, female 438.3
379_1 60 years, male 425.6
243_1 75 years, male 401.7
314_1 67 years, male 400.2
319_1 81 years, male 385.8
350_1 84 years, female 383.5
109_1 81 years, female 381.8
99_1 64 years, male 373.8
145_1 84 years, male 371.0
18_1 88 years, male 368.1
291_1 76 years, male 366.9
518_1 75 years, female 362.3
320_1 89 years, female 359.4
173_1 67 years, male 356.5
335_1 73 years, female 355.5
254_1 77 years, female 346.7
384_1 83 years, male 346.6
17_1 71 years, male 341.6
117_1 61 years, male 326.2
218_1 71 years, female 324.1
526_1 61 years, male 317.9
315_1 62 years, female 315.7
288_1 66 years, female 306.6
162_1 79 years, female 295.7
41_1 94 years, female 285.8
6_1 73 years, female 283.6
517_1 88 years, male 273.0
501_1 88 years, male 262.2
352_1 62 years, male 261.7
265_1 87 years, male 252.1
43_1 64 years, female 245.7
503_1 68 years, male 245.4
318_1 68 years, male 244.8
32_1 67 years, male 240.7
264_1 73 years, female 234.3
348_1 84 years, male 223.4
324_1 76 years, male 212.3
425_1 59 years, female 207.5
9_1 66 years, female 204.8
251_1 78 years, male 204.8
120_1 70 years, female 197.1
406_1 79 years, male 195.3
491_1 89 years, female 190.4
415_1 77 years, female 188.1
347_1 72 years, male 187.6
375_1 74 years, female 186.4
466_1 57 years, female 181.2
322_1 76 years, male 178.9
172_1 72 years, female 176.0
490_1 67 years, female 173.4
307_1 66 years, female 172.9
321_1 62 years, female 172.8
317_1 60 years, male 171.2
229_1 69 years, female 167.2
377_1 82 years, female 165.3
313_1 79 years, female 161.7
217_1 76 years, male 143.4
414_1 84 years, female 139.5
115_1 83 years, male 138.6
405_1 91 years, male 134.8
293_1 68 years, female 127.5
153_1 70 years, female 111.6
499_1 55 years, female 104.4
480_1 63 years, male 104.3
126_1 63 years, male 101.7
42_1 85 years, male 99.2
468_1 89 years, male 99.1
404_1 82 years, female 97.9
149_1 88 years, male 97.0
81_1 67 years, male 95.5
355_1 70 years, female 94.0
506_1 65 years, male 79.2
142_1 61 years, female 79.1
139_1 64 years, female 75.2
292_1 71 years, male 75.1
119_1 70 years, female 69.6
316_1 62 years, male 65.7
266_1 85 years, male 65.5
163_1 78 years, male 65.3
447_1 81 years, male 63.1
396_1 62 years, male 61.5
35_1 74 years, female 60.7
177_1 74 years, male 58.4
495_1 57 years, female 58.4
308_1 70 years, female 55.6
89_1 63 years, male 43.5
286_1 68 years, female 38.6
246_1 77 years, male 31.7
311_1 78 years, male 30.5
237_1 82 years, male 22.5
2_1 77 years, female 22.4
356_1 87 years, female 13.4
413_1 59 years, female 7.5
Show allShow less

RETINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 772.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Retina
Scaled Tags Per Million: 772.7
FF:10030-101E3 24-65 years, mixed 772.7

RETINA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 10.9
Pig sample Sample description nTPM
Retina
nTPM: 10.9
Samples: 4

Max nTPM: 17.0
Min nTPM: 7.1
Sample A Female 11.5
Sample B Female 7.1
Sample C Male 17.0
Sample D Male 8.1

RETINA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 20.5
Mouse sample Sample description nTPM
Retina
nTPM: 20.5
Samples: 4

Max nTPM: 27.0
Min nTPM: 15.5
Sample A Male 19.4
Sample B Male 19.9
Sample C Female 27.0
Sample D Female 15.5

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by the Knut & Alice Wallenberg Foundation.