BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:65.3 nTPM
HPA:65.3 nTPM
GTEx:42.7 nTPM
FANTOM5:158.7 Scaled Tags Per Million
Pig:56.2 nTPM
Mouse:50.7 nTPM
Allen mouse:5.4 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA068009
Glial cells Not detected
Neuronal cells Not detected


BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 65.3
Sample id Sample description nTPM
Caudate nucleus
nTPM: 21.7
2288 Male, age 75, left hemisphere 38.1
2846 Female, age 79, unknown 25.1
2481 Female, age 94, left hemisphere 21.4
1854 Male, age 80, left hemisphere 20.5
1781 Male, age 74, unknown 19.6
2290 Female, age 72, unknown 17.8
2289 Male, age 61, right hemisphere 17.7
1857 Female, age 85, left hemisphere 12.9
Claustrum
nTPM: 36.7
2292 Female, age 85, both hemispheres 64.1
1956 Male, age 74, unknown 54.6
2392 Female, age 94, both hemispheres 44.7
2491 Male, age 75, both hemispheres 31.4
2196 Female, age 79, unknown 31.0
2198 Male, age 80, both hemispheres 30.3
2568 Male, age 61, both hemispheres 28.1
2284 Female, age 91, both hemispheres 25.9
2645 Female, age 72, unknown 20.5
Globus pallidus, externus
nTPM: 60.9
1996 Male, age 80, right hemisphere 81.2
2772 Female, age 79, unknown 61.2
2646 Male, age 61, right hemisphere 61.0
2567 Female, age 72, unknown 51.6
2395 Male, age 75, both hemispheres 49.4
Globus pallidus, internus
nTPM: 65.3
2111 Female, age 85, right hemisphere 92.7
2778 Female, age 91, both hemispheres 77.3
2287 Male, age 75, right hemisphere 71.1
2037 Male, age 80, right hemisphere 62.8
1818 Male, age 74, unknown 60.5
2566 Female, age 72, unknown 58.2
2483 Female, age 94, right hemisphere 34.1
Nucleus accumbens
nTPM: 31.8
2391 Female, age 94, left hemisphere 63.9
2286 Male, age 75, left hemisphere 37.9
2732 Male, age 80, right hemisphere 36.0
2698 Female, age 72, unknown 34.3
1806 Female, age 85, left hemisphere 24.4
2824 Male, age 61, right hemisphere 24.1
1783 Male, age 74, unknown 21.8
1856 Female, age 91, right hemisphere 12.2
Nucleus basalis of Meynert
nTPM: 31.6
2569 Male, age 61, both hemispheres 48.5
2821 Male, age 75, both hemispheres 31.6
2393 Male, age 80, right hemisphere 24.8
2484 Female, age 94, left hemisphere 21.7
Nucleus of the diagonal band
nTPM: 11.3
1812 Female, age 91, both hemispheres 15.4
2029 Male, age 61, right hemisphere 13.5
1979 Male, age 74, unknown 11.8
2775 Male, age 80, right hemisphere 8.0
2195 Female, age 85, both hemispheres 7.9
Olfactory tubercle
nTPM: 14.4
1998 Female, age 91, both hemispheres 16.4
2856 Male, age 75, right hemisphere 15.4
2487 Female, age 94, left hemisphere 13.5
1846 Male, age 80, right hemisphere 12.1
Putamen
nTPM: 25.6
2482 Female, age 94, left hemisphere 34.7
1829 Male, age 74, unknown 34.1
2489 Female, age 72, unknown 26.5
2647 Male, age 75, left hemisphere 26.5
1937 Female, age 91, right hemisphere 24.6
2466 Female, age 79, unknown 21.8
1838 Male, age 80, right hemisphere 11.2
Septal nuclei
nTPM: 18.5
2394 Male, age 61, left hemisphere 42.6
2199 Male, age 80, right hemisphere 20.2
2629 Female, age 94, right hemisphere 18.8
2059 Female, age 85, both hemispheres 15.0
2009 Female, age 91, both hemispheres 12.7
2031 Female, age 72, unknown 12.4
1960 Male, age 74, unknown 8.1

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 42.7
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 28.3
Samples: 246

Max nTPM: 119.1
Min nTPM: 3.5
Std nTPM: 18.0
Median nTPM: 24.4
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 119.1
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 110.6
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 92.4
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 80.5
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 70.1
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 68.7
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 67.9
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 66.3
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 65.9
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 65.7
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 64.5
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 16.3
Samples: 246

Max nTPM: 164.9
Min nTPM: 2.3
Std nTPM: 16.8
Median nTPM: 11.6
GTEX-1HFI6-0011-R6b-SM-CM2SR 40-49 years, male 164.9
GTEX-ZUA1-0011-R6b-SM-4YCDD 40-49 years, male 105.5
GTEX-1C6WA-0011-R6a-SM-7PBYP 60-69 years, male 93.1
GTEX-YFC4-0011-R6b-SM-4V6E1 40-49 years, female 72.4
GTEX-ZAB4-0011-R6a-SM-4SOKD 40-49 years, male 72.2
GTEX-1EN7A-0011-R6b-SM-9QEHW 40-49 years, male 67.9
GTEX-WL46-0011-R6A-SM-3LK6X 50-59 years, male 53.9
GTEX-1F48J-0011-R6a-SM-CJI2F 50-59 years, female 51.3
GTEX-11DYG-0011-R6a-SM-DO936 60-69 years, male 49.7
GTEX-1H23P-0011-R6b-SM-A9G1H 60-69 years, male 48.6
GTEX-1IL2U-0011-R6a-SM-ARZLG 60-69 years, male 47.2
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Brain - Putamen (basal ganglia)
Average nTPM: 42.7
Samples: 205

Max nTPM: 166.0
Min nTPM: 4.2
Std nTPM: 24.5
Median nTPM: 37.5
GTEX-1I1CD-0011-R7a-SM-CMKHA 60-69 years, female 166.0
GTEX-1I1GV-0011-R7a-SM-ARU6R 60-69 years, male 109.2
GTEX-14JG1-0011-R7b-SM-5YYAV 40-49 years, male 108.1
GTEX-1IKJJ-0011-R7a-SM-ARZLH 60-69 years, male 102.9
GTEX-1GZ2Q-0011-R7b-SM-9OSWN 40-49 years, male 99.7
GTEX-1H23P-0011-R7b-SM-CKZP2 60-69 years, male 98.5
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 95.9
GTEX-Q2AG-0011-R7A-SM-2HMJP 40-49 years, female 93.9
GTEX-1HB9E-0011-R7b-SM-A9G1Q 50-59 years, male 92.7
GTEX-1GN73-0011-R7a-SM-CJI2U 60-69 years, male 92.3
GTEX-1H1ZS-0011-R7a-SM-CL54P 70-79 years, male 87.3
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 158.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 36.5
FF:10164-103B2 76 years, female 36.5
Globus pallidus
Scaled Tags Per Million: 158.7
FF:10175-103C4 60 years, female 164.1
FF:10161-103A8 76 years, female 153.2
Nucleus accumbens
Scaled Tags Per Million: 105.7
FF:10037-101F1 23-56 years, mixed 105.7
Putamen
Scaled Tags Per Million: 26.3
FF:10176-103C5 60 years, female 26.3

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 56.2
Pig sample Sample description nTPM
Caudate
nTPM: 21.4
Samples: 4

Max nTPM: 23.1
Min nTPM: 19.9
Sample A Female 21.9
Sample B Female 19.9
Sample C Male 23.1
Sample D Male 20.7
Putamen
nTPM: 56.2
Samples: 4

Max nTPM: 92.2
Min nTPM: 29.8
Sample A Female 92.2
Sample B Female 29.8
Sample C Male 46.3
Sample D Male 56.6
Septum
nTPM: 34.4
Samples: 4

Max nTPM: 41.2
Min nTPM: 23.7
Sample A Female 36.7
Sample B Female 23.7
Sample C Male 36.1
Sample D Male 41.2
Ventral pallidum
nTPM: 52.9
Samples: 4

Max nTPM: 79.5
Min nTPM: 19.8
Sample A Female 19.8
Sample B Female 43.9
Sample C Male 79.5
Sample D Male 68.5

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 50.7
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 50.7
Samples: 4

Max nTPM: 57.1
Min nTPM: 44.1
Sample A Male 57.1
Sample B Male 55.9
Sample C Female 45.6
Sample D Female 44.1
Septum
nTPM: 49.7
Samples: 4

Max nTPM: 59.0
Min nTPM: 36.6
Sample A Male 36.6
Sample B Male 48.4
Sample C Female 54.8
Sample D Female 59.0
Ventral forebrain
nTPM: 30.7
Samples: 4

Max nTPM: 32.1
Min nTPM: 29.1
Sample A Male 32.1
Sample B Male 30.7
Sample C Female 30.9
Sample D Female 29.1

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 5.4
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 4.4
2272 Antisense, RP_040526_02_E03, Mouse strain C57BL/6J (56 days, male) 4.4
2271 Antisense, RP_040526_02_E03, Mouse strain C57BL/6J (56 days, male) 1.2
Pallidum
Expression energy: 5.4
2272 Antisense, RP_040526_02_E03, Mouse strain C57BL/6J (56 days, male) 5.4
2271 Antisense, RP_040526_02_E03, Mouse strain C57BL/6J (56 days, male) 1.4

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The Human Protein Atlas

The Human Protein Atlas project is funded
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