BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Not detected
Neuronal cells: Medium
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:51.6 nTPM
HPA:51.6 nTPM
GTEx:44.3 nTPM
FANTOM5:67.9 Scaled Tags Per Million
Pig:10.8 nTPM
Mouse:43.7 nTPM
Allen mouse:0.1 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA035978
Glial cells Not detected
Neuronal cells Medium



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 51.6
Sample id Sample description nTPM
Caudate nucleus
nTPM: 46.4
2481 Female, age 94, left hemisphere 50.7
2288 Male, age 75, left hemisphere 50.5
2846 Female, age 79, unknown 48.8
1854 Male, age 80, left hemisphere 48.3
2290 Female, age 72, unknown 46.1
1781 Male, age 74, unknown 43.8
1857 Female, age 85, left hemisphere 42.3
2289 Male, age 61, right hemisphere 40.9
Claustrum
nTPM: 49.8
2198 Male, age 80, both hemispheres 55.7
1956 Male, age 74, unknown 53.0
2292 Female, age 85, both hemispheres 51.2
2196 Female, age 79, unknown 51.1
2568 Male, age 61, both hemispheres 49.1
2392 Female, age 94, both hemispheres 48.5
2645 Female, age 72, unknown 47.8
2284 Female, age 91, both hemispheres 46.7
2491 Male, age 75, both hemispheres 45.2
Globus pallidus, externus
nTPM: 50.6
1996 Male, age 80, right hemisphere 55.2
2395 Male, age 75, both hemispheres 54.2
2772 Female, age 79, unknown 53.8
2646 Male, age 61, right hemisphere 45.9
2567 Female, age 72, unknown 44.0
Globus pallidus, internus
nTPM: 51.6
2287 Male, age 75, right hemisphere 59.2
2111 Female, age 85, right hemisphere 53.5
2778 Female, age 91, both hemispheres 52.3
1818 Male, age 74, unknown 51.3
2037 Male, age 80, right hemisphere 50.2
2483 Female, age 94, right hemisphere 48.7
2566 Female, age 72, unknown 46.2
Nucleus accumbens
nTPM: 46.9
2286 Male, age 75, left hemisphere 51.7
2391 Female, age 94, left hemisphere 50.7
2698 Female, age 72, unknown 50.4
1856 Female, age 91, right hemisphere 45.6
2824 Male, age 61, right hemisphere 45.0
1783 Male, age 74, unknown 44.1
1806 Female, age 85, left hemisphere 44.1
2732 Male, age 80, right hemisphere 43.7
Nucleus basalis of Meynert
nTPM: 44.4
2821 Male, age 75, both hemispheres 46.3
2393 Male, age 80, right hemisphere 45.5
2569 Male, age 61, both hemispheres 45.1
2484 Female, age 94, left hemisphere 40.7
Nucleus of the diagonal band
nTPM: 48.5
1812 Female, age 91, both hemispheres 52.2
2775 Male, age 80, right hemisphere 50.5
2029 Male, age 61, right hemisphere 50.3
2195 Female, age 85, both hemispheres 48.7
1979 Male, age 74, unknown 41.1
Olfactory tubercle
nTPM: 48.0
1846 Male, age 80, right hemisphere 49.8
1998 Female, age 91, both hemispheres 49.5
2856 Male, age 75, right hemisphere 47.2
2487 Female, age 94, left hemisphere 45.7
Putamen
nTPM: 46.1
2482 Female, age 94, left hemisphere 49.3
1829 Male, age 74, unknown 48.8
1937 Female, age 91, right hemisphere 47.4
1838 Male, age 80, right hemisphere 46.0
2466 Female, age 79, unknown 44.3
2647 Male, age 75, left hemisphere 43.7
2489 Female, age 72, unknown 43.1
Septal nuclei
nTPM: 46.5
2629 Female, age 94, right hemisphere 53.2
2031 Female, age 72, unknown 49.7
1960 Male, age 74, unknown 47.4
2009 Female, age 91, both hemispheres 45.1
2394 Male, age 61, left hemisphere 44.5
2199 Male, age 80, right hemisphere 43.8
2059 Female, age 85, both hemispheres 41.5

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 44.3
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 40.8
Samples: 246

Max nTPM: 92.6
Min nTPM: 26.1
Std nTPM: 8.8
Median nTPM: 39.3
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 92.6
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 80.8
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 65.4
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 63.7
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 63.4
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 62.7
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 61.9
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 61.7
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 61.4
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 60.4
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 60.3
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 40.0
Samples: 246

Max nTPM: 120.7
Min nTPM: 24.7
Std nTPM: 10.3
Median nTPM: 38.4
GTEX-1RLM8-0011-R6a-SM-EYYXS 50-59 years, male 120.7
GTEX-1HFI6-0011-R6b-SM-CM2SR 40-49 years, male 90.7
GTEX-1C6WA-0011-R6a-SM-7PBYP 60-69 years, male 70.6
GTEX-15EO6-0011-R6a-SM-7KULK 50-59 years, male 70.5
GTEX-16XZZ-0011-R6a-SM-7IGNE 60-69 years, male 68.9
GTEX-13OVJ-0011-R6b-SM-5L3GH 50-59 years, female 68.7
GTEX-ZUA1-0011-R6b-SM-4YCDD 40-49 years, male 65.0
GTEX-1EN7A-0011-R6b-SM-9QEHW 40-49 years, male 64.0
GTEX-QDT8-0011-R6A-SM-32PKI 30-39 years, female 63.3
GTEX-1LVAO-0011-R6b-SM-EZ6MX 60-69 years, male 58.9
GTEX-1H3VE-0011-R6b-SM-A9G1M 40-49 years, male 58.5
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Brain - Putamen (basal ganglia)
Average nTPM: 44.3
Samples: 205

Max nTPM: 71.1
Min nTPM: 25.4
Std nTPM: 8.7
Median nTPM: 43.3
GTEX-12WSA-0011-R7b-SM-5GU5U 60-69 years, male 71.1
GTEX-1I1GS-0011-R7a-SM-CM2T6 60-69 years, male 70.6
GTEX-QMR6-0011-R7A-SM-32PKL 50-59 years, male 70.4
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 69.7
GTEX-1EH9U-0011-R7a-SM-9QEGU 60-69 years, male 67.6
GTEX-1H3VE-0011-R7b-SM-CE6S9 40-49 years, male 66.9
GTEX-1MA7X-0011-R7b-SM-EYYWS 60-69 years, male 66.5
GTEX-1LVA9-0011-R7a-SM-EYYWG 50-59 years, male 66.2
GTEX-1EN7A-0011-R7b-SM-9QEHX 40-49 years, male 64.5
GTEX-1H1ZS-0011-R7a-SM-CL54P 70-79 years, male 63.9
GTEX-14E7W-0011-R7b-SM-5ZZV4 70-79 years, male 62.0
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 67.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 55.7
FF:10164-103B2 76 years, female 55.7
Globus pallidus
Scaled Tags Per Million: 62.8
FF:10161-103A8 76 years, female 71.1
FF:10175-103C4 60 years, female 54.4
Nucleus accumbens
Scaled Tags Per Million: 66.3
FF:10037-101F1 23-56 years, mixed 66.3
Putamen
Scaled Tags Per Million: 67.9
FF:10176-103C5 60 years, female 67.9

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 10.8
Pig sample Sample description nTPM
Caudate
nTPM: 7.7
Samples: 4

Max nTPM: 8.4
Min nTPM: 7.0
Sample A Female 8.4
Sample B Female 7.7
Sample C Male 7.8
Sample D Male 7.0
Putamen
nTPM: 10.5
Samples: 4

Max nTPM: 15.4
Min nTPM: 7.3
Sample A Female 15.4
Sample B Female 7.3
Sample C Male 10.5
Sample D Male 8.8
Septum
nTPM: 10.8
Samples: 4

Max nTPM: 14.0
Min nTPM: 7.8
Sample A Female 11.3
Sample B Female 7.8
Sample C Male 14.0
Sample D Male 10.1
Ventral pallidum
nTPM: 9.7
Samples: 4

Max nTPM: 12.7
Min nTPM: 7.0
Sample A Female 7.0
Sample B Female 9.7
Sample C Male 12.7
Sample D Male 9.5

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 43.7
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 43.7
Samples: 4

Max nTPM: 47.3
Min nTPM: 39.3
Sample A Male 42.9
Sample B Male 39.3
Sample C Female 45.4
Sample D Female 47.3
Septum
nTPM: 42.2
Samples: 4

Max nTPM: 44.2
Min nTPM: 41.0
Sample A Male 42.4
Sample B Male 41.1
Sample C Female 44.2
Sample D Female 41.0
Ventral forebrain
nTPM: 42.2
Samples: 4

Max nTPM: 46.0
Min nTPM: 40.2
Sample A Male 40.2
Sample B Male 41.9
Sample C Female 46.0
Sample D Female 40.6

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.1
76003530 Antisense, RP_060608_02_F06, Mouse strain C57BL/6J (56 days, male) 0.1
74272477 Antisense, RP_050915_01_A01, Mouse strain C57BL/6J (56 days, male) 0.0
Pallidum
Expression energy: 0.1
76003530 Antisense, RP_060608_02_F06, Mouse strain C57BL/6J (56 days, male) 0.1
74272477 Antisense, RP_050915_01_A01, Mouse strain C57BL/6J (56 days, male) 0.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
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