MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:30.0 nTPM
HPA:30.0 nTPM
GTEx:30.1 nTPM
FANTOM5:68.9 Scaled Tags Per Million
Pig:14.5 nTPM
Mouse:39.1 nTPM
Allen mouse:0.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 30.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 27.4
2411 Female, age 72, unknown 29.5
1827 Male, age 72, unknown 29.0
1870 Female, age 42, unknown 28.6
1833 Male, age 53, unknown 27.9
2019 Male, age 18, unknown 27.9
2219 Male, age 76, both hemispheres 26.9
2586 Male, age 75, left hemisphere 26.5
1830 Male, age 51, unknown 26.4
2828 Female, age 72, unknown 26.2
2666 Male, age 74, left hemisphere 24.5
Dorsal raphe nucleus
nTPM: 27.8
2298 Female, age 72, unknown 29.5
2750 Male, age 76, both hemispheres 28.7
2047 Male, age 72, unknown 27.6
1828 Male, age 53, unknown 27.2
2016 Female, age 72, unknown 26.0
Inferior colliculus
nTPM: 28.6
2097 Female, age 72, unknown 30.1
1848 Female, age 42, unknown 29.5
1890 Male, age 53, unknown 27.8
2849 Male, age 72, unknown 27.0
Median raphe nucleus
nTPM: 30.0
2220 Male, age 76, midline 30.0
Pedunculopontine tegmental nucleus
nTPM: 28.7
2334 Male, age 80, both hemispheres 30.0
1921 Female, age 85, both hemispheres 28.2
2338 Male, age 61, both hemispheres 28.0
Periaquaductal grey, anterior
nTPM: 28.4
1947 Male, age 18, unknown 30.3
1795 Male, age 51, unknown 27.9
2502 Female, age 75, unknown 26.9
Periaquaductal grey, dorsal
nTPM: 28.1
1840 Male, age 53, unknown 29.1
2464 Female, age 72, unknown 28.0
2850 Male, age 76, both hemispheres 28.0
1831 Male, age 72, unknown 27.3
Periaquaductal grey, lateral
nTPM: 27.4
2272 Male, age 74, both hemispheres 28.6
2053 Male, age 18, unknown 27.7
2140 Male, age 76, both hemispheres 25.9
Pretectal area
nTPM: 29.3
1944 Female, age 72, unknown 32.8
1816 Male, age 51, unknown 32.0
1817 Female, age 42, unknown 31.8
2007 Male, age 72, unknown 30.9
1815 Male, age 53, unknown 30.1
2224 Female, age 72, unknown 29.4
2273 Male, age 74, both hemispheres 28.3
2407 Male, age 75, both hemispheres 27.7
2667 Female, age 75, unknown 27.4
2825 Male, age 18, unknown 27.3
2316 Male, age 76, right hemisphere 25.2
Red nucleus
nTPM: 26.9
1821 Female, age 72, unknown 29.6
2725 Female, age 75, unknown 28.7
2785 Male, age 18, unknown 27.8
2823 Male, age 76, right hemisphere 27.6
2584 Male, age 75, left hemisphere 27.1
1865 Male, age 51, unknown 26.9
2503 Female, age 72, unknown 26.6
1904 Male, age 53, unknown 26.3
2769 Male, age 72, unknown 26.1
1954 Female, age 42, unknown 26.0
2227 Male, age 72, unknown 26.0
2588 Male, age 74, left hemisphere 24.4
Substantia nigra
nTPM: 29.7
2241 Male, age 72, unknown 33.1
1916 Female, age 42, unknown 31.7
1889 Female, age 72, unknown 31.0
1851 Male, age 51, unknown 30.8
2590 Female, age 75, unknown 29.5
2409 Female, age 72, unknown 29.4
1941 Male, age 53, unknown 29.3
2665 Male, age 74, both hemispheres 29.3
2699 Male, age 18, unknown 27.0
2583 Male, age 75, right hemisphere 25.8
Superior colliculus
nTPM: 28.0
2087 Female, age 72, unknown 29.6
1895 Male, age 76, right hemisphere 29.4
2668 Female, age 75, unknown 29.1
1796 Male, age 53, unknown 28.8
2587 Male, age 74, left hemisphere 28.4
2261 Male, age 18, unknown 28.0
1839 Male, age 51, unknown 27.8
1913 Female, age 42, unknown 27.1
1995 Male, age 72, unknown 26.6
2664 Male, age 75, both hemispheres 25.6
Ventral tegmental area
nTPM: 28.6
2410 Female, age 72, unknown 31.8
2218 Male, age 76, both hemispheres 30.4
1915 Female, age 42, unknown 28.5
2223 Female, age 72, unknown 27.2
2021 Male, age 53, unknown 27.1
1942 Male, age 51, unknown 26.6

MIDBRAIN - GTEx RNA-seqi
Average nTPM 30.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 30.1
Samples: 139

Max nTPM: 50.4
Min nTPM: 10.5
Std nTPM: 7.8
Median nTPM: 29.2
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 50.4
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 48.7
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 47.2
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 47.0
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 46.9
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 46.0
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 45.8
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 44.1
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 43.9
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 43.9
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 43.6
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 68.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 68.9
FF:10158-103A5 76 years, female 68.9

MIDBRAIN - Pig RNA-seqi
Average nTPM 14.5
Pig sample Sample description nTPM
Midbrain
nTPM: 14.3
Samples: 4

Max nTPM: 15.5
Min nTPM: 13.1
Sample A Female 13.1
Sample B Female 13.6
Sample C Male 14.8
Sample D Male 15.5
Periaqueductal gray
nTPM: 12.1
Samples: 3

Max nTPM: 13.0
Min nTPM: 11.6
Sample B Female 11.7
Sample C Male 13.0
Sample D Male 11.6
Substantia nigra
nTPM: 14.1
Samples: 4

Max nTPM: 17.7
Min nTPM: 12.7
Sample A Female 17.7
Sample B Female 12.7
Sample C Male 13.3
Sample D Male 12.7
Superior colliculi
nTPM: 14.5
Samples: 4

Max nTPM: 16.6
Min nTPM: 13.3
Sample A Female 16.6
Sample B Female 13.3
Sample C Male 14.3
Sample D Male 13.8

MIDBRAIN - Mouse RNA-seqi
Average nTPM 39.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 39.1
Samples: 4

Max nTPM: 40.5
Min nTPM: 38.0
Sample A Male 38.8
Sample B Male 39.0
Sample C Female 40.5
Sample D Female 38.0

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.1
70445377 Antisense, RP_050614_03_F08, Mouse strain C57BL/6J (56 days, male) 0.1

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.