MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:29.8 nTPM
HPA:29.8 nTPM
GTEx:79.6 nTPM
FANTOM5:174.0 Scaled Tags Per Million
Pig:33.7 nTPM
Mouse:1.4 nTPM
Allen mouse:0.9 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 29.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 28.3
2219 Male, age 76, both hemispheres 64.3
2586 Male, age 75, left hemisphere 57.0
2019 Male, age 18, unknown 30.2
2666 Male, age 74, left hemisphere 26.3
1833 Male, age 53, unknown 22.6
2828 Female, age 72, unknown 20.3
1827 Male, age 72, unknown 17.3
1870 Female, age 42, unknown 15.7
1830 Male, age 51, unknown 14.9
2411 Female, age 72, unknown 14.5
Dorsal raphe nucleus
nTPM: 23.0
2298 Female, age 72, unknown 36.7
1828 Male, age 53, unknown 22.7
2016 Female, age 72, unknown 22.6
2750 Male, age 76, both hemispheres 18.1
2047 Male, age 72, unknown 14.9
Inferior colliculus
nTPM: 18.9
2849 Male, age 72, unknown 21.8
1890 Male, age 53, unknown 21.3
2097 Female, age 72, unknown 17.8
1848 Female, age 42, unknown 14.6
Median raphe nucleus
nTPM: 23.2
2220 Male, age 76, midline 23.2
Pedunculopontine tegmental nucleus
nTPM: 22.9
2338 Male, age 61, both hemispheres 35.3
2334 Male, age 80, both hemispheres 24.8
1921 Female, age 85, both hemispheres 8.5
Periaquaductal grey, anterior
nTPM: 27.7
1795 Male, age 51, unknown 45.6
2502 Female, age 75, unknown 22.5
1947 Male, age 18, unknown 14.9
Periaquaductal grey, dorsal
nTPM: 25.5
1831 Male, age 72, unknown 46.5
2850 Male, age 76, both hemispheres 27.2
2464 Female, age 72, unknown 14.3
1840 Male, age 53, unknown 13.8
Periaquaductal grey, lateral
nTPM: 29.8
2272 Male, age 74, both hemispheres 39.3
2140 Male, age 76, both hemispheres 28.5
2053 Male, age 18, unknown 21.6
Pretectal area
nTPM: 21.7
2224 Female, age 72, unknown 31.0
2273 Male, age 74, both hemispheres 30.9
1817 Female, age 42, unknown 26.9
2407 Male, age 75, both hemispheres 23.6
1815 Male, age 53, unknown 20.9
2007 Male, age 72, unknown 20.1
2316 Male, age 76, right hemisphere 19.3
2667 Female, age 75, unknown 19.0
2825 Male, age 18, unknown 16.6
1816 Male, age 51, unknown 15.8
1944 Female, age 72, unknown 14.9
Red nucleus
nTPM: 20.5
2584 Male, age 75, left hemisphere 35.4
2785 Male, age 18, unknown 33.3
1904 Male, age 53, unknown 29.6
2725 Female, age 75, unknown 23.5
2227 Male, age 72, unknown 21.2
2769 Male, age 72, unknown 20.7
1821 Female, age 72, unknown 17.4
1865 Male, age 51, unknown 15.9
2503 Female, age 72, unknown 14.2
2823 Male, age 76, right hemisphere 13.0
1954 Female, age 42, unknown 11.0
2588 Male, age 74, left hemisphere 10.9
Substantia nigra
nTPM: 19.1
1851 Male, age 51, unknown 31.0
2583 Male, age 75, right hemisphere 26.4
2590 Female, age 75, unknown 22.4
2699 Male, age 18, unknown 21.3
2665 Male, age 74, both hemispheres 21.2
1916 Female, age 42, unknown 19.0
1889 Female, age 72, unknown 17.5
1941 Male, age 53, unknown 15.1
2241 Male, age 72, unknown 9.0
2409 Female, age 72, unknown 8.6
Superior colliculus
nTPM: 21.2
1995 Male, age 72, unknown 28.9
1796 Male, age 53, unknown 26.1
2261 Male, age 18, unknown 24.4
2587 Male, age 74, left hemisphere 23.0
1913 Female, age 42, unknown 22.3
2664 Male, age 75, both hemispheres 22.3
1839 Male, age 51, unknown 18.7
2668 Female, age 75, unknown 17.6
2087 Female, age 72, unknown 16.8
1895 Male, age 76, right hemisphere 12.1
Ventral tegmental area
nTPM: 21.4
1915 Female, age 42, unknown 32.0
2223 Female, age 72, unknown 22.6
2218 Male, age 76, both hemispheres 20.5
2021 Male, age 53, unknown 20.3
1942 Male, age 51, unknown 18.9
2410 Female, age 72, unknown 14.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 79.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 79.6
Samples: 139

Max nTPM: 350.3
Min nTPM: 13.9
Std nTPM: 51.8
Median nTPM: 65.9
GTEX-YFC4-0011-R2a-SM-4V6DZ 40-49 years, female 350.3
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 235.0
GTEX-145LS-0011-R2a-SM-5PNZI 60-69 years, female 202.1
GTEX-T6MN-0011-R2A-SM-32QOW 50-59 years, male 198.0
GTEX-13SLX-0011-R2b-SM-5S2VP 50-59 years, female 195.0
GTEX-11EMC-0011-R2b-SM-DO114 60-69 years, female 189.8
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 184.5
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 183.8
GTEX-131XH-0011-R2b-SM-5DUVY 50-59 years, male 171.7
GTEX-16Z82-0011-R2b-SM-79OK9 60-69 years, male 167.0
GTEX-T5JC-0011-R2A-SM-32PLZ 20-29 years, male 159.5
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 174.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 174.0
FF:10158-103A5 76 years, female 174.0

MIDBRAIN - Pig RNA-seqi
Average nTPM 33.7
Pig sample Sample description nTPM
Midbrain
nTPM: 18.5
Samples: 4

Max nTPM: 25.2
Min nTPM: 11.5
Sample A Female 22.1
Sample B Female 11.5
Sample C Male 25.2
Sample D Male 15.2
Periaqueductal gray
nTPM: 13.9
Samples: 3

Max nTPM: 21.0
Min nTPM: 9.0
Sample B Female 9.0
Sample C Male 21.0
Sample D Male 11.6
Substantia nigra
nTPM: 25.8
Samples: 4

Max nTPM: 37.9
Min nTPM: 16.5
Sample A Female 29.1
Sample B Female 37.9
Sample C Male 19.5
Sample D Male 16.5
Superior colliculi
nTPM: 33.7
Samples: 4

Max nTPM: 49.0
Min nTPM: 19.6
Sample A Female 39.3
Sample B Female 49.0
Sample C Male 26.7
Sample D Male 19.6

MIDBRAIN - Mouse RNA-seqi
Average nTPM 1.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 1.5
Samples: 4

Max nTPM: 2.4
Min nTPM: 0.8
Sample A Male 2.4
Sample B Male 1.5
Sample C Female 0.8
Sample D Female 1.1

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.9
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.9
2336 Antisense, RP_040507_01_D09, Mouse strain C57BL/6J (56 days, male) 0.9
2335 Antisense, RP_040507_01_D09, Mouse strain C57BL/6J (56 days, male) 0.6

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.