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BRAIN PUTAMEN Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
PUTAMEN - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
HPA:204.9 nTPM
GTEx:93.3 nTPM
FANTOM5:60.7 Scaled Tags Per Million
Pig:50.7 nTPM

PUTAMEN - HPA Brain RNA-seq
Avg nTPM 204.9
Sample id Sample description nTPM
Putamen
nTPM: 204.9
2482 Female, age 94, left hemisphere 212.7
1838 Male, age 80, right hemisphere 208.4
2466 Female, age 79, unknown 205.7
1937 Female, age 91, right hemisphere 204.2
2647 Male, age 75, left hemisphere 203.4
2489 Female, age 72, unknown 201.2
1829 Male, age 74, unknown 198.6

PUTAMEN - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 93.3
GTEx sample id Sample description nTPM
Brain - Putamen (basal ganglia)
Average nTPM: 93.3
Samples: 205

Max nTPM: 257.0
Min nTPM: 23.1
Std nTPM: 41.5
Median nTPM: 84.4
GTEX-1H3VE-0011-R7b-SM-CE6S9 40-49 years, male 257.0
GTEX-14E7W-0011-R7b-SM-5ZZV4 70-79 years, male 219.4
GTEX-132Q8-0011-R7b-SM-5N9F1 60-69 years, male 218.4
GTEX-NPJ8-0011-R7a-SM-2HMJV 40-49 years, male 216.8
GTEX-13FHP-0011-R7b-SM-5LZYI 50-59 years, male 216.0
GTEX-1GF9W-0011-R7b-SM-9QEIF 60-69 years, male 213.8
GTEX-1H1ZS-0011-R7a-SM-CL54P 70-79 years, male 213.7
GTEX-NPJ7-0011-R7a-SM-EV79B 60-69 years, female 213.3
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 208.4
GTEX-1R46S-0011-R7b-SM-EXUTH 60-69 years, female 186.5
GTEX-1F48J-0011-R7a-SM-CJI2G 50-59 years, female 185.7
GTEX-1EH9U-0011-R7a-SM-9QEGU 60-69 years, male 183.7
GTEX-1IKOH-0011-R7b-SM-CKZPH 60-69 years, female 183.3
GTEX-1LVA9-0011-R7a-SM-EYYWG 50-59 years, male 182.4
GTEX-QMR6-0011-R7A-SM-32PKL 50-59 years, male 175.7
GTEX-1F75B-0011-R7a-SM-ARU84 50-59 years, male 166.6
GTEX-1CB4H-0011-R7b-SM-CJI27 60-69 years, female 156.9
GTEX-12ZZW-0011-R7a-SM-5DUWC 50-59 years, male 156.2
GTEX-X261-0011-R7A-SM-4E3JJ 50-59 years, male 153.5
GTEX-1C64N-0011-R7a-SM-7IGOI 50-59 years, male 148.8
GTEX-11DYG-0011-R7b-SM-EXUS6 60-69 years, male 145.8
GTEX-183WM-0011-R7b-SM-731AX 70-79 years, female 145.7
GTEX-1F6I4-0011-R7a-SM-CJI24 60-69 years, male 145.0
GTEX-12WSA-0011-R7b-SM-5GU5U 60-69 years, male 143.8
GTEX-ZV68-0011-R7a-SM-51MT4 50-59 years, female 142.4
GTEX-17MF6-0011-R7b-SM-7LG6J 40-49 years, male 140.8
GTEX-1MA7X-0011-R7b-SM-EYYWS 60-69 years, male 138.7
GTEX-1I1GS-0011-R7a-SM-CM2T6 60-69 years, male 135.5
GTEX-1E2YA-0011-R7a-SM-CJI1Z 50-59 years, male 132.1
GTEX-1EN7A-0011-R7b-SM-9QEHX 40-49 years, male 130.8
GTEX-1GZ4I-0011-R7b-SM-ARU71 50-59 years, male 129.0
GTEX-1E1VI-0011-R7b-SM-9QEGR 50-59 years, male 127.3
GTEX-OHPN-0011-R7A-SM-2I5FI 60-69 years, female 121.7
GTEX-1J8Q2-0011-R7a-SM-CKZPF 60-69 years, male 120.5
GTEX-1H23P-0011-R7b-SM-CKZP2 60-69 years, male 119.7
GTEX-15ER7-0011-R7a-SM-6M46N 20-29 years, female 118.4
GTEX-ZDXO-0011-R7a-SM-4WWCU 60-69 years, male 118.4
GTEX-1LSNL-0011-R7a-SM-EYYWI 50-59 years, male 117.1
GTEX-15G19-0011-R7b-SM-6M479 60-69 years, male 116.7
GTEX-11WQC-0011-R7b-SM-5BC7A 60-69 years, male 113.9
GTEX-1JMQK-0011-R7b-SM-EXUTF 60-69 years, male 113.3
GTEX-ZF28-0011-R7a-SM-4WKF5 60-69 years, male 113.2
GTEX-13OW5-0011-R7a-SM-5O9C9 60-69 years, male 111.9
GTEX-12WSI-0011-R7b-SM-5GU78 50-59 years, male 111.8
GTEX-11DXW-0011-R7b-SM-DO119 40-49 years, male 111.8
GTEX-ZE7O-0011-R7a-SM-57WCU 50-59 years, female 110.8
GTEX-13JVG-0011-R7b-SM-5MR3Q 60-69 years, male 109.7
GTEX-1EU9M-0011-R7b-SM-9OSVU 60-69 years, male 107.5
GTEX-1A8G6-0011-R7b-SM-7MXTV 60-69 years, male 107.1
GTEX-WWYW-0011-R7A-SM-3NB3H 50-59 years, female 106.9
GTEX-ZXG5-0011-R7b-SM-57WCC 60-69 years, male 106.8
GTEX-11TTK-0011-R7b-SM-DNZZZ 60-69 years, female 106.5
GTEX-1GMR8-0011-R7b-SM-CJI2I 50-59 years, female 106.1
GTEX-16Z82-0011-R7a-SM-7MKGJ 60-69 years, male 105.9
GTEX-Z93S-0011-R7b-SM-4RGNK 50-59 years, male 105.7
GTEX-139TS-0011-R7a-SM-5K7X7 60-69 years, male 105.1
GTEX-15EO6-0011-R7a-SM-6M46Q 50-59 years, male 105.0
GTEX-1EX96-0011-R7a-SM-9OSVW 50-59 years, male 104.8
GTEX-11DZ1-0011-R7a-SM-DNZZH 50-59 years, male 104.1
GTEX-14LZ3-0011-R7a-SM-69LQN 60-69 years, female 103.9
GTEX-1B996-0011-R7b-SM-7IGNT 60-69 years, male 101.7
GTEX-1HCU6-0011-R7b-SM-ARL77 60-69 years, female 101.6
GTEX-17HHY-0011-R7a-SM-718A1 50-59 years, male 100.7
GTEX-WVLH-0011-R7A-SM-3MJFB 50-59 years, male 99.8
GTEX-1OJC4-0011-R7a-SM-EYYX4 50-59 years, female 99.6
GTEX-14ASI-0011-R7b-SM-5YY9G 60-69 years, male 99.4
GTEX-S7SE-0011-R7A-SM-2XCDI 50-59 years, male 99.2
GTEX-144GO-0011-R7b-SM-5S2TT 60-69 years, male 99.0
GTEX-13OVJ-0011-R7a-SM-5L3G1 50-59 years, female 98.3
GTEX-1445S-0011-R7b-SM-5PNUG 60-69 years, male 95.6
GTEX-1ICLZ-0011-R7a-SM-ARZLU 60-69 years, male 95.2
GTEX-1B8SF-0011-R7b-SM-9OSVM 60-69 years, male 94.8
GTEX-1GN2E-0011-R7b-SM-9QEIJ 60-69 years, male 94.4
GTEX-ZVT3-0011-R7a-SM-57WCO 60-69 years, female 94.2
GTEX-13FHO-0011-R7b-SM-5LZXD 60-69 years, male 94.0
GTEX-1F75W-0011-R7a-SM-9QEI6 60-69 years, male 93.9
GTEX-13X6K-0011-R7b-SM-5P9K7 60-69 years, female 93.7
GTEX-1LH75-0011-R7a-SM-EXOIF 50-59 years, female 93.7
GTEX-1JJ6O-0011-R7b-SM-EXUTB 60-69 years, male 93.1
GTEX-15DCD-0011-R7b-SM-6LPID 70-79 years, female 92.8
GTEX-1EKGG-0011-R7a-SM-CKZNN 60-69 years, male 92.5
GTEX-13OVL-0011-R7a-SM-5P9GW 50-59 years, male 92.2
GTEX-17HII-0011-R7a-SM-79OMS 50-59 years, male 91.7
GTEX-13N1W-0011-R7b-SM-5MR4F 70-79 years, male 91.4
GTEX-14C5O-0011-R7b-SM-5YYAH 60-69 years, male 91.0
GTEX-T6MN-0011-R7A-SM-32QP5 50-59 years, male 90.0
GTEX-1I1GV-0011-R7a-SM-ARU6R 60-69 years, male 89.8
GTEX-11NUK-0011-R7a-SM-DO93P 50-59 years, male 89.7
GTEX-T5JC-0011-R7A-SM-32PME 20-29 years, male 89.5
GTEX-ZE9C-0011-R7a-SM-4WWCX 60-69 years, male 88.9
GTEX-1H3O1-0011-R7a-SM-CE6SJ 60-69 years, male 88.2
GTEX-12WSM-0011-R7b-SM-5EGLD 60-69 years, male 87.8
GTEX-11PRG-0011-R7a-SM-DNZZT 50-59 years, male 87.6
GTEX-13OW8-0011-R7a-SM-5L3FP 60-69 years, male 86.7
GTEX-1MJK2-0011-R7a-SM-EXUS4 50-59 years, male 86.2
GTEX-13CZV-0011-R7b-SM-5LZXH 60-69 years, male 86.0
GTEX-1GZ2Q-0011-R7b-SM-9OSWN 40-49 years, male 86.0
GTEX-QDT8-0011-R7A-SM-32PKF 30-39 years, female 85.9
GTEX-P44G-0011-R7A-SM-2I3F9 30-39 years, male 85.8
GTEX-13FLV-0011-R7b-SM-5K7WW 50-59 years, male 85.3
GTEX-1HFI6-0011-R7b-SM-CM2SS 40-49 years, male 85.0
GTEX-17HG3-0011-R7b-SM-7EPGR 30-39 years, female 84.7
GTEX-RU72-0011-R7A-SM-2TF5U 50-59 years, female 84.4
GTEX-1HCVE-0011-R7b-SM-A9G1I 50-59 years, male 84.3
GTEX-14PJO-0011-R7a-SM-664NR 60-69 years, male 83.9
GTEX-1GF9V-0011-R7a-SM-CJI2R 60-69 years, male 83.7
GTEX-QVJO-0011-R7A-SM-2S1QO 60-69 years, female 83.6
GTEX-1J1OQ-0011-R7b-SM-ARU87 40-49 years, female 83.0
GTEX-13QJC-0011-R7b-SM-5PNUM 60-69 years, female 82.9
GTEX-11ONC-0011-R7b-SM-DO93J 60-69 years, male 82.7
GTEX-13FLW-0011-R7b-SM-5L3EZ 50-59 years, male 82.6
GTEX-1CB4G-0011-R7b-SM-9QEGP 60-69 years, male 82.2
GTEX-12ZZZ-0011-R7b-SM-5EGLE 60-69 years, male 82.1
GTEX-13PVQ-0011-R7a-SM-5L3G3 50-59 years, male 81.8
GTEX-1IKK5-0011-R7b-SM-A9G39 60-69 years, male 81.8
GTEX-YFC4-0011-R7b-SM-4V6E2 40-49 years, female 80.6
GTEX-12WSF-0011-R7b-SM-5HL99 70-79 years, male 80.1
GTEX-13NYB-0011-R7a-SM-5MR5D 40-49 years, male 79.5
GTEX-XLM4-0011-R7A-SM-4AT5L 60-69 years, male 79.5
GTEX-13G51-0011-R7b-SM-5LZXG 60-69 years, male 78.9
GTEX-139TT-0011-R7b-SM-5J2MN 60-69 years, male 78.8
GTEX-1HT8W-0011-R7b-SM-CMKH8 30-39 years, male 78.5
GTEX-1IOXB-0011-R7b-SM-CE6SM 50-59 years, male 78.3
GTEX-YJ89-0011-R7a-SM-4V6GO 60-69 years, male 78.0
GTEX-13112-0011-R7b-SM-5DUVW 50-59 years, male 77.7
GTEX-Y8DK-0011-R7A-SM-4SOJZ 60-69 years, male 76.9
GTEX-1GTWX-0011-R7a-SM-A96RO 60-69 years, male 76.8
GTEX-14ABY-0011-R7b-SM-5PNWS 50-59 years, male 76.5
GTEX-11NV4-0011-R7a-SM-57WDH 60-69 years, male 76.2
GTEX-145MG-0011-R7b-SM-5P9JY 50-59 years, male 75.8
GTEX-ZUA1-0011-R7b-SM-4YCDP 40-49 years, male 75.8
GTEX-WL46-0011-R7A-SM-3LK7X 50-59 years, male 75.1
GTEX-R55E-0011-R7A-SM-2TC5Z 20-29 years, male 74.6
GTEX-17F97-0011-R7b-SM-7MGVY 50-59 years, male 74.6
GTEX-13O3Q-0011-R7a-SM-5KM38 50-59 years, male 73.4
GTEX-17EVQ-0011-R7a-SM-7EWDA 70-79 years, male 73.0
GTEX-1IY9M-0011-R7a-SM-D4P49 60-69 years, male 72.8
GTEX-15DYW-0011-R7a-SM-7KULG 60-69 years, female 72.3
GTEX-1H3NZ-0011-R7a-SM-A9SKD 60-69 years, male 72.1
GTEX-12WSE-0011-R7a-SM-5PNWF 20-29 years, male 71.4
GTEX-1H1DG-0011-R7b-SM-A96RR 70-79 years, male 70.1
GTEX-13RTJ-0011-R7b-SM-5P9JS 60-69 years, male 69.0
GTEX-17EVP-0011-R7a-SM-7LTAN 40-49 years, male 68.8
GTEX-1LVAO-0011-R7a-SM-EYYWZ 60-69 years, male 68.8
GTEX-13JUV-0011-R7b-SM-5LZZG 40-49 years, female 68.0
GTEX-15CHQ-0011-R7b-SM-D4P1Q 60-69 years, male 67.5
GTEX-147GR-0011-R7a-SM-5S2RP 60-69 years, male 66.8
GTEX-1F75A-0011-R7b-SM-9QEHE 50-59 years, male 66.8
GTEX-13X6I-0011-R7b-SM-5PNWP 60-69 years, male 66.5
GTEX-1IDJH-0011-R7a-SM-A9SM1 70-79 years, male 66.2
GTEX-N7MS-0011-R7a-SM-2HMKN 60-69 years, male 66.0
GTEX-1H1CY-0011-R7a-SM-CJI32 60-69 years, female 65.4
GTEX-1F52S-0011-R7b-SM-9QEH8 60-69 years, female 64.8
GTEX-1A3MX-0011-R7a-SM-7DUEM 60-69 years, male 64.7
GTEX-14PJM-0011-R7a-SM-6AJBX 50-59 years, female 64.6
GTEX-N7MT-0011-R7a-SM-2I3FZ 60-69 years, female 64.5
GTEX-12WSC-0011-R7b-SM-5LU9L 50-59 years, male 64.1
GTEX-18464-0011-R7b-SM-731CM 50-59 years, male 63.9
GTEX-1192X-0011-R7b-SM-DNZZC 50-59 years, male 63.8
GTEX-13N2G-0011-R7a-SM-5MR42 60-69 years, male 63.3
GTEX-11DXY-0011-R7a-SM-DO11L 60-69 years, male 62.3
GTEX-14JG1-0011-R7b-SM-5YYAV 40-49 years, male 62.2
GTEX-14BMV-0011-R7b-SM-5YY9J 50-59 years, male 62.1
GTEX-14PN4-0011-R7b-SM-69LQQ 50-59 years, male 62.0
GTEX-RNOR-0011-R7A-SM-2TF4V 50-59 years, female 61.4
GTEX-TSE9-0011-R7A-SM-3DB7P 60-69 years, female 61.0
GTEX-1B8L1-0011-R7b-SM-9OSVK 60-69 years, male 61.0
GTEX-1GMRU-0011-R7b-SM-A96TJ 50-59 years, male 59.9
GTEX-131YS-0011-R7a-SM-5IJDA 60-69 years, female 59.7
GTEX-14BIN-0011-R7b-SM-5S2RI 50-59 years, female 59.6
GTEX-18465-0011-R7b-SM-7LG6V 50-59 years, male 58.8
GTEX-ZVZQ-0011-R7b-SM-57WBB 60-69 years, female 58.3
GTEX-1H4P4-0011-R7b-SM-ARU77 50-59 years, male 58.1
GTEX-12ZZX-0011-R7b-SM-5DUVV 40-49 years, female 57.2
GTEX-1HGF4-0011-R7a-SM-A96S2 60-69 years, male 56.5
GTEX-11OF3-0011-R7a-SM-57WCG 60-69 years, male 55.6
GTEX-12ZZY-0011-R7a-SM-5EGLB 60-69 years, male 55.6
GTEX-WHSE-0011-R7A-SM-3P5YZ 20-29 years, male 55.3
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 54.4
GTEX-ZAB4-0011-R7a-SM-4SOKE 40-49 years, male 54.3
GTEX-1C6WA-0011-R7b-SM-7P8S8 60-69 years, male 54.3
GTEX-13OW6-0011-R7b-SM-5L3H4 50-59 years, male 54.2
GTEX-13S7M-0011-R7a-SM-5O9DK 60-69 years, female 53.9
GTEX-WZTO-0011-R7B-SM-4E3IS 40-49 years, male 53.3
GTEX-1GN73-0011-R7a-SM-CJI2U 60-69 years, male 52.0
GTEX-12WSD-0011-R7b-SM-5PNWE 60-69 years, female 51.4
GTEX-11GSP-0011-R7b-SM-57WC3 60-69 years, female 50.8
GTEX-1HB9E-0011-R7b-SM-A9G1Q 50-59 years, male 50.2
GTEX-NL3H-0011-R7a-SM-2I3G5 60-69 years, male 50.1
GTEX-1I1GQ-0011-R7a-SM-CJI41 50-59 years, male 49.3
GTEX-1313W-0011-R7b-SM-5DUWL 50-59 years, female 48.6
GTEX-145LS-0011-R7a-SM-5PNWM 60-69 years, female 47.6
GTEX-15RJE-0011-R7a-SM-7DHL9 40-49 years, male 47.5
GTEX-13VXU-0011-R7b-SM-5SI72 50-59 years, male 44.5
GTEX-Q2AG-0011-R7A-SM-2HMJP 40-49 years, female 44.3
GTEX-1IKJJ-0011-R7a-SM-ARZLH 60-69 years, male 44.3
GTEX-1B933-0011-R7a-SM-7DUGX 50-59 years, female 43.3
GTEX-145MH-0011-R7a-SM-5PNWH 50-59 years, male 42.7
GTEX-1AX9I-0011-R7b-SM-7P8Q3 60-69 years, male 42.0
GTEX-13O3O-0011-R7b-SM-5P9GZ 60-69 years, female 40.3
GTEX-1EMGI-0011-R7b-SM-9QEH5 60-69 years, male 40.1
GTEX-13FXS-0011-R7a-SM-5L3FC 50-59 years, male 39.5
GTEX-144GL-0011-R7b-SM-5P9HX 50-59 years, male 39.4
GTEX-13X6J-0011-R7b-SM-5PNUC 50-59 years, male 36.0
GTEX-1I1CD-0011-R7a-SM-CMKHA 60-69 years, female 23.1
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PUTAMEN - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 60.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Putamen
Scaled Tags Per Million: 60.7
FF:10176-103C5 60 years, female 60.7

PUTAMEN - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 50.7
Pig sample Sample description nTPM
Putamen
nTPM: 50.7
Samples: 4

Max nTPM: 68.8
Min nTPM: 35.3
Sample A Female 35.3
Sample B Female 68.8
Sample C Male 36.5
Sample D Male 62.0

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