BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Not detected
Neuronal cells: Low
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:53.7 nTPM
HPA:53.7 nTPM
GTEx:53.2 nTPM
FANTOM5:138.6 Scaled Tags Per Million
Pig:48.7 nTPM
Mouse:101.7 nTPM
Allen mouse:5.5 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA035734
Glial cells Not detected
Neuronal cells Low



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 53.7
Sample id Sample description nTPM
Caudate nucleus
nTPM: 42.1
1781 Male, age 74, unknown 46.4
2288 Male, age 75, left hemisphere 45.6
2481 Female, age 94, left hemisphere 45.6
2846 Female, age 79, unknown 44.5
2290 Female, age 72, unknown 40.7
1857 Female, age 85, left hemisphere 38.6
1854 Male, age 80, left hemisphere 38.3
2289 Male, age 61, right hemisphere 36.9
Claustrum
nTPM: 46.9
2292 Female, age 85, both hemispheres 50.9
1956 Male, age 74, unknown 49.2
2196 Female, age 79, unknown 48.8
2568 Male, age 61, both hemispheres 48.4
2645 Female, age 72, unknown 47.9
2198 Male, age 80, both hemispheres 46.8
2284 Female, age 91, both hemispheres 44.2
2491 Male, age 75, both hemispheres 43.7
2392 Female, age 94, both hemispheres 41.7
Globus pallidus, externus
nTPM: 52.5
2567 Female, age 72, unknown 55.4
1996 Male, age 80, right hemisphere 54.8
2646 Male, age 61, right hemisphere 51.4
2772 Female, age 79, unknown 51.2
2395 Male, age 75, both hemispheres 49.9
Globus pallidus, internus
nTPM: 53.7
2287 Male, age 75, right hemisphere 59.5
2778 Female, age 91, both hemispheres 55.4
2566 Female, age 72, unknown 55.1
2111 Female, age 85, right hemisphere 54.9
2037 Male, age 80, right hemisphere 52.3
2483 Female, age 94, right hemisphere 49.8
1818 Male, age 74, unknown 48.8
Nucleus accumbens
nTPM: 42.4
2391 Female, age 94, left hemisphere 47.8
2698 Female, age 72, unknown 46.9
2286 Male, age 75, left hemisphere 45.1
2732 Male, age 80, right hemisphere 41.9
1783 Male, age 74, unknown 41.6
1806 Female, age 85, left hemisphere 40.8
1856 Female, age 91, right hemisphere 37.9
2824 Male, age 61, right hemisphere 37.6
Nucleus basalis of Meynert
nTPM: 43.2
2569 Male, age 61, both hemispheres 49.1
2821 Male, age 75, both hemispheres 44.5
2484 Female, age 94, left hemisphere 41.4
2393 Male, age 80, right hemisphere 37.7
Nucleus of the diagonal band
nTPM: 41.6
2029 Male, age 61, right hemisphere 43.1
1812 Female, age 91, both hemispheres 42.2
2775 Male, age 80, right hemisphere 41.8
2195 Female, age 85, both hemispheres 40.5
1979 Male, age 74, unknown 40.2
Olfactory tubercle
nTPM: 39.2
1846 Male, age 80, right hemisphere 41.6
1998 Female, age 91, both hemispheres 39.6
2856 Male, age 75, right hemisphere 38.8
2487 Female, age 94, left hemisphere 36.9
Putamen
nTPM: 43.4
2647 Male, age 75, left hemisphere 50.9
2489 Female, age 72, unknown 46.3
2482 Female, age 94, left hemisphere 44.6
1829 Male, age 74, unknown 44.4
2466 Female, age 79, unknown 41.8
1937 Female, age 91, right hemisphere 39.0
1838 Male, age 80, right hemisphere 36.5
Septal nuclei
nTPM: 40.8
1960 Male, age 74, unknown 46.0
2031 Female, age 72, unknown 43.9
2629 Female, age 94, right hemisphere 42.6
2394 Male, age 61, left hemisphere 39.0
2059 Female, age 85, both hemispheres 38.9
2009 Female, age 91, both hemispheres 38.2
2199 Male, age 80, right hemisphere 37.3

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 53.2
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 48.6
Samples: 246

Max nTPM: 89.5
Min nTPM: 33.2
Std nTPM: 7.8
Median nTPM: 47.1
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 89.5
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 79.2
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 70.1
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 68.9
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 68.5
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 68.1
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 67.0
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 66.6
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 64.1
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 63.9
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 63.5
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 49.7
Samples: 246

Max nTPM: 128.1
Min nTPM: 33.2
Std nTPM: 8.8
Median nTPM: 48.8
GTEX-1E2YA-0011-R6b-SM-CE6R2 50-59 years, male 128.1
GTEX-16XZZ-0011-R6a-SM-7IGNE 60-69 years, male 94.9
GTEX-13PDP-0011-R6b-SM-5O9D5 60-69 years, male 71.5
GTEX-13IVO-0011-R6b-SM-5K7X9 70-79 years, male 68.5
GTEX-13N1W-0011-R6a-SM-5MR43 70-79 years, male 68.3
GTEX-1I1CD-0011-R6b-SM-CJI3Y 60-69 years, female 67.7
GTEX-14PHW-0011-R6b-SM-5YYAR 60-69 years, female 65.6
GTEX-X4XY-0011-R6B-SM-46MVB 60-69 years, male 64.8
GTEX-14PN4-0011-R6b-SM-69LQU 50-59 years, male 63.7
GTEX-12WSD-0011-R6b-SM-5P9JU 60-69 years, female 62.8
GTEX-1J8Q2-0011-R6a-SM-CKZPG 60-69 years, male 62.5
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Brain - Putamen (basal ganglia)
Average nTPM: 53.2
Samples: 205

Max nTPM: 131.6
Min nTPM: 36.8
Std nTPM: 10.4
Median nTPM: 51.3
GTEX-1E2YA-0011-R7a-SM-CJI1Z 50-59 years, male 131.6
GTEX-1F75B-0011-R7a-SM-ARU84 50-59 years, male 100.2
GTEX-1I1CD-0011-R7a-SM-CMKHA 60-69 years, female 83.4
GTEX-1J1OQ-0011-R7b-SM-ARU87 40-49 years, female 76.8
GTEX-1GMR8-0011-R7b-SM-CJI2I 50-59 years, female 75.7
GTEX-13N2G-0011-R7a-SM-5MR42 60-69 years, male 73.2
GTEX-NPJ7-0011-R7a-SM-EV79B 60-69 years, female 71.9
GTEX-1GN73-0011-R7a-SM-CJI2U 60-69 years, male 71.4
GTEX-144GO-0011-R7b-SM-5S2TT 60-69 years, male 71.3
GTEX-1GN2E-0011-R7b-SM-9QEIJ 60-69 years, male 70.8
GTEX-14PN4-0011-R7b-SM-69LQQ 50-59 years, male 68.7
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 138.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 87.0
FF:10164-103B2 76 years, female 87.0
Globus pallidus
Scaled Tags Per Million: 138.6
FF:10175-103C4 60 years, female 140.5
FF:10161-103A8 76 years, female 136.7
Nucleus accumbens
Scaled Tags Per Million: 102.2
FF:10037-101F1 23-56 years, mixed 102.2
Putamen
Scaled Tags Per Million: 100.0
FF:10176-103C5 60 years, female 100.0

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 48.7
Pig sample Sample description nTPM
Caudate
nTPM: 44.8
Samples: 4

Max nTPM: 54.6
Min nTPM: 34.4
Sample A Female 34.4
Sample B Female 51.2
Sample C Male 54.6
Sample D Male 38.9
Putamen
nTPM: 45.2
Samples: 4

Max nTPM: 56.2
Min nTPM: 38.9
Sample A Female 38.9
Sample B Female 39.3
Sample C Male 46.3
Sample D Male 56.2
Septum
nTPM: 48.7
Samples: 4

Max nTPM: 61.7
Min nTPM: 37.1
Sample A Female 37.1
Sample B Female 43.6
Sample C Male 52.2
Sample D Male 61.7
Ventral pallidum
nTPM: 46.8
Samples: 4

Max nTPM: 59.7
Min nTPM: 33.0
Sample A Female 33.0
Sample B Female 48.0
Sample C Male 59.7
Sample D Male 46.6

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 101.7
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 83.4
Samples: 4

Max nTPM: 86.6
Min nTPM: 76.8
Sample A Male 76.8
Sample B Male 83.7
Sample C Female 86.6
Sample D Female 86.3
Septum
nTPM: 101.7
Samples: 4

Max nTPM: 107.5
Min nTPM: 95.1
Sample A Male 95.1
Sample B Male 101.0
Sample C Female 107.5
Sample D Female 103.0
Ventral forebrain
nTPM: 90.0
Samples: 4

Max nTPM: 100.2
Min nTPM: 85.5
Sample A Male 87.2
Sample B Male 85.5
Sample C Female 100.2
Sample D Female 87.0

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 5.5
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 5.1
69529280 Antisense, RP_050421_03_H07, Mouse strain C57BL/6J (56 days, male) 5.1
Pallidum
Expression energy: 5.5
69529280 Antisense, RP_050421_03_H07, Mouse strain C57BL/6J (56 days, male) 5.5

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