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BRAIN PUTAMEN Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
PUTAMEN - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
HPA:123.1 nTPM
GTEx:103.3 nTPM
FANTOM5:114.7 Scaled Tags Per Million
Pig:23.0 nTPM

PUTAMEN - HPA Brain RNA-seq
Avg nTPM 123.1
Sample id Sample description nTPM
Putamen
nTPM: 123.1
2482 Female, age 94, left hemisphere 147.3
1829 Male, age 74, unknown 123.6
2489 Female, age 72, unknown 122.7
2647 Male, age 75, left hemisphere 118.2
1838 Male, age 80, right hemisphere 117.5
1937 Female, age 91, right hemisphere 116.9
2466 Female, age 79, unknown 115.2

PUTAMEN - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 103.3
GTEx sample id Sample description nTPM
Brain - Putamen (basal ganglia)
Average nTPM: 103.3
Samples: 205

Max nTPM: 242.7
Min nTPM: 42.2
Std nTPM: 31.0
Median nTPM: 97.4
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 242.7
GTEX-144GO-0011-R7b-SM-5S2TT 60-69 years, male 222.1
GTEX-14E7W-0011-R7b-SM-5ZZV4 70-79 years, male 205.6
GTEX-NL3H-0011-R7a-SM-2I3G5 60-69 years, male 186.4
GTEX-1LVA9-0011-R7a-SM-EYYWG 50-59 years, male 183.8
GTEX-ZV68-0011-R7a-SM-51MT4 50-59 years, female 178.1
GTEX-1I1CD-0011-R7a-SM-CMKHA 60-69 years, female 178.1
GTEX-1EU9M-0011-R7b-SM-9OSVU 60-69 years, male 168.5
GTEX-ZVZQ-0011-R7b-SM-57WBB 60-69 years, female 158.6
GTEX-1EKGG-0011-R7a-SM-CKZNN 60-69 years, male 156.6
GTEX-1GZ2Q-0011-R7b-SM-9OSWN 40-49 years, male 156.1
GTEX-11WQC-0011-R7b-SM-5BC7A 60-69 years, male 153.4
GTEX-1F6I4-0011-R7a-SM-CJI24 60-69 years, male 151.2
GTEX-ZVT3-0011-R7a-SM-57WCO 60-69 years, female 148.3
GTEX-1OJC4-0011-R7a-SM-EYYX4 50-59 years, female 148.2
GTEX-1MA7X-0011-R7b-SM-EYYWS 60-69 years, male 146.9
GTEX-1HFI6-0011-R7b-SM-CM2SS 40-49 years, male 145.1
GTEX-1GN2E-0011-R7b-SM-9QEIJ 60-69 years, male 144.8
GTEX-15G19-0011-R7b-SM-6M479 60-69 years, male 144.2
GTEX-1H1CY-0011-R7a-SM-CJI32 60-69 years, female 143.8
GTEX-1EH9U-0011-R7a-SM-9QEGU 60-69 years, male 143.3
GTEX-1LSNL-0011-R7a-SM-EYYWI 50-59 years, male 142.5
GTEX-139TS-0011-R7a-SM-5K7X7 60-69 years, male 140.6
GTEX-1C64N-0011-R7a-SM-7IGOI 50-59 years, male 137.9
GTEX-1F52S-0011-R7b-SM-9QEH8 60-69 years, female 134.7
GTEX-147GR-0011-R7a-SM-5S2RP 60-69 years, male 134.6
GTEX-Y8DK-0011-R7A-SM-4SOJZ 60-69 years, male 132.2
GTEX-ZE7O-0011-R7a-SM-57WCU 50-59 years, female 130.7
GTEX-1I1GV-0011-R7a-SM-ARU6R 60-69 years, male 130.7
GTEX-14ABY-0011-R7b-SM-5PNWS 50-59 years, male 130.6
GTEX-1192X-0011-R7b-SM-DNZZC 50-59 years, male 130.5
GTEX-17HHY-0011-R7a-SM-718A1 50-59 years, male 130.2
GTEX-ZE9C-0011-R7a-SM-4WWCX 60-69 years, male 130.2
GTEX-ZDXO-0011-R7a-SM-4WWCU 60-69 years, male 130.0
GTEX-1JJ6O-0011-R7b-SM-EXUTB 60-69 years, male 128.8
GTEX-1EN7A-0011-R7b-SM-9QEHX 40-49 years, male 127.6
GTEX-13FXS-0011-R7a-SM-5L3FC 50-59 years, male 127.0
GTEX-1GF9V-0011-R7a-SM-CJI2R 60-69 years, male 126.9
GTEX-13FHP-0011-R7b-SM-5LZYI 50-59 years, male 125.8
GTEX-12WSA-0011-R7b-SM-5GU5U 60-69 years, male 124.4
GTEX-WWYW-0011-R7A-SM-3NB3H 50-59 years, female 124.1
GTEX-12ZZY-0011-R7a-SM-5EGLB 60-69 years, male 124.0
GTEX-YFC4-0011-R7b-SM-4V6E2 40-49 years, female 123.9
GTEX-14JG1-0011-R7b-SM-5YYAV 40-49 years, male 123.7
GTEX-11GSP-0011-R7b-SM-57WC3 60-69 years, female 122.5
GTEX-ZF28-0011-R7a-SM-4WKF5 60-69 years, male 122.1
GTEX-1GZ4I-0011-R7b-SM-ARU71 50-59 years, male 122.0
GTEX-11DYG-0011-R7b-SM-EXUS6 60-69 years, male 121.7
GTEX-13OW8-0011-R7a-SM-5L3FP 60-69 years, male 121.4
GTEX-15EO6-0011-R7a-SM-6M46Q 50-59 years, male 121.4
GTEX-183WM-0011-R7b-SM-731AX 70-79 years, female 121.3
GTEX-YJ89-0011-R7a-SM-4V6GO 60-69 years, male 121.2
GTEX-13JUV-0011-R7b-SM-5LZZG 40-49 years, female 121.1
GTEX-RU72-0011-R7A-SM-2TF5U 50-59 years, female 120.9
GTEX-14LZ3-0011-R7a-SM-69LQN 60-69 years, female 120.2
GTEX-1JMQK-0011-R7b-SM-EXUTF 60-69 years, male 120.2
GTEX-WVLH-0011-R7A-SM-3MJFB 50-59 years, male 120.1
GTEX-145MG-0011-R7b-SM-5P9JY 50-59 years, male 119.0
GTEX-1EX96-0011-R7a-SM-9OSVW 50-59 years, male 118.9
GTEX-1F75W-0011-R7a-SM-9QEI6 60-69 years, male 118.7
GTEX-1MJK2-0011-R7a-SM-EXUS4 50-59 years, male 118.6
GTEX-13FLW-0011-R7b-SM-5L3EZ 50-59 years, male 117.5
GTEX-13OW6-0011-R7b-SM-5L3H4 50-59 years, male 117.0
GTEX-1F48J-0011-R7a-SM-CJI2G 50-59 years, female 116.8
GTEX-14ASI-0011-R7b-SM-5YY9G 60-69 years, male 115.2
GTEX-14BMV-0011-R7b-SM-5YY9J 50-59 years, male 115.0
GTEX-13CZV-0011-R7b-SM-5LZXH 60-69 years, male 114.1
GTEX-1A8G6-0011-R7b-SM-7MXTV 60-69 years, male 113.9
GTEX-ZXG5-0011-R7b-SM-57WCC 60-69 years, male 113.0
GTEX-13JVG-0011-R7b-SM-5MR3Q 60-69 years, male 111.6
GTEX-12ZZZ-0011-R7b-SM-5EGLE 60-69 years, male 111.2
GTEX-1CB4G-0011-R7b-SM-9QEGP 60-69 years, male 110.9
GTEX-R55E-0011-R7A-SM-2TC5Z 20-29 years, male 110.5
GTEX-13G51-0011-R7b-SM-5LZXG 60-69 years, male 110.1
GTEX-13NYB-0011-R7a-SM-5MR5D 40-49 years, male 109.5
GTEX-1IOXB-0011-R7b-SM-CE6SM 50-59 years, male 109.5
GTEX-18464-0011-R7b-SM-731CM 50-59 years, male 109.1
GTEX-11PRG-0011-R7a-SM-DNZZT 50-59 years, male 109.1
GTEX-17HG3-0011-R7b-SM-7EPGR 30-39 years, female 107.9
GTEX-12WSE-0011-R7a-SM-5PNWF 20-29 years, male 106.8
GTEX-QVJO-0011-R7A-SM-2S1QO 60-69 years, female 106.5
GTEX-QMR6-0011-R7A-SM-32PKL 50-59 years, male 106.3
GTEX-1E1VI-0011-R7b-SM-9QEGR 50-59 years, male 106.1
GTEX-1IKOH-0011-R7b-SM-CKZPH 60-69 years, female 106.1
GTEX-1445S-0011-R7b-SM-5PNUG 60-69 years, male 105.4
GTEX-1GMR8-0011-R7b-SM-CJI2I 50-59 years, female 104.4
GTEX-11NUK-0011-R7a-SM-DO93P 50-59 years, male 103.7
GTEX-13X6I-0011-R7b-SM-5PNWP 60-69 years, male 103.6
GTEX-13OW5-0011-R7a-SM-5O9C9 60-69 years, male 103.3
GTEX-17EVQ-0011-R7a-SM-7EWDA 70-79 years, male 102.4
GTEX-12WSM-0011-R7b-SM-5EGLD 60-69 years, male 102.3
GTEX-13OVL-0011-R7a-SM-5P9GW 50-59 years, male 102.0
GTEX-1B8SF-0011-R7b-SM-9OSVM 60-69 years, male 102.0
GTEX-17HII-0011-R7a-SM-79OMS 50-59 years, male 101.7
GTEX-1H3VE-0011-R7b-SM-CE6S9 40-49 years, male 100.2
GTEX-T5JC-0011-R7A-SM-32PME 20-29 years, male 100.0
GTEX-13QJC-0011-R7b-SM-5PNUM 60-69 years, female 99.9
GTEX-13X6J-0011-R7b-SM-5PNUC 50-59 years, male 99.3
GTEX-1F75B-0011-R7a-SM-ARU84 50-59 years, male 99.0
GTEX-13FLV-0011-R7b-SM-5K7WW 50-59 years, male 97.8
GTEX-1IKJJ-0011-R7a-SM-ARZLH 60-69 years, male 97.8
GTEX-12ZZX-0011-R7b-SM-5DUVV 40-49 years, female 97.7
GTEX-144GL-0011-R7b-SM-5P9HX 50-59 years, male 97.4
GTEX-14PJM-0011-R7a-SM-6AJBX 50-59 years, female 97.3
GTEX-15DCD-0011-R7b-SM-6LPID 70-79 years, female 97.3
GTEX-15ER7-0011-R7a-SM-6M46N 20-29 years, female 97.3
GTEX-11DXW-0011-R7b-SM-DO119 40-49 years, male 97.0
GTEX-11DZ1-0011-R7a-SM-DNZZH 50-59 years, male 96.9
GTEX-1CB4H-0011-R7b-SM-CJI27 60-69 years, female 96.6
GTEX-WZTO-0011-R7B-SM-4E3IS 40-49 years, male 96.2
GTEX-NPJ8-0011-R7a-SM-2HMJV 40-49 years, male 96.1
GTEX-13VXU-0011-R7b-SM-5SI72 50-59 years, male 95.0
GTEX-13X6K-0011-R7b-SM-5P9K7 60-69 years, female 94.8
GTEX-1HB9E-0011-R7b-SM-A9G1Q 50-59 years, male 94.5
GTEX-N7MS-0011-R7a-SM-2HMKN 60-69 years, male 94.4
GTEX-1B8L1-0011-R7b-SM-9OSVK 60-69 years, male 94.4
GTEX-1R46S-0011-R7b-SM-EXUTH 60-69 years, female 94.3
GTEX-12WSD-0011-R7b-SM-5PNWE 60-69 years, female 94.2
GTEX-1EMGI-0011-R7b-SM-9QEH5 60-69 years, male 93.9
GTEX-1IKK5-0011-R7b-SM-A9G39 60-69 years, male 93.9
GTEX-18465-0011-R7b-SM-7LG6V 50-59 years, male 93.8
GTEX-OHPN-0011-R7A-SM-2I5FI 60-69 years, female 93.8
GTEX-139TT-0011-R7b-SM-5J2MN 60-69 years, male 93.4
GTEX-1GMRU-0011-R7b-SM-A96TJ 50-59 years, male 93.4
GTEX-12ZZW-0011-R7a-SM-5DUWC 50-59 years, male 92.9
GTEX-11DXY-0011-R7a-SM-DO11L 60-69 years, male 92.9
GTEX-13RTJ-0011-R7b-SM-5P9JS 60-69 years, male 92.8
GTEX-14BIN-0011-R7b-SM-5S2RI 50-59 years, female 92.7
GTEX-1I1GQ-0011-R7a-SM-CJI41 50-59 years, male 92.7
GTEX-1H23P-0011-R7b-SM-CKZP2 60-69 years, male 92.0
GTEX-13PVQ-0011-R7a-SM-5L3G3 50-59 years, male 91.4
GTEX-12WSC-0011-R7b-SM-5LU9L 50-59 years, male 90.5
GTEX-1H3O1-0011-R7a-SM-CE6SJ 60-69 years, male 90.4
GTEX-13S7M-0011-R7a-SM-5O9DK 60-69 years, female 88.8
GTEX-ZUA1-0011-R7b-SM-4YCDP 40-49 years, male 88.3
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 87.8
GTEX-11ONC-0011-R7b-SM-DO93J 60-69 years, male 87.6
GTEX-RNOR-0011-R7A-SM-2TF4V 50-59 years, female 86.8
GTEX-12WSF-0011-R7b-SM-5HL99 70-79 years, male 86.6
GTEX-13112-0011-R7b-SM-5DUVW 50-59 years, male 86.6
GTEX-Q2AG-0011-R7A-SM-2HMJP 40-49 years, female 86.3
GTEX-T6MN-0011-R7A-SM-32QP5 50-59 years, male 85.6
GTEX-11OF3-0011-R7a-SM-57WCG 60-69 years, male 85.3
GTEX-P44G-0011-R7A-SM-2I3F9 30-39 years, male 85.3
GTEX-11TTK-0011-R7b-SM-DNZZZ 60-69 years, female 85.3
GTEX-1A3MX-0011-R7a-SM-7DUEM 60-69 years, male 85.0
GTEX-1HGF4-0011-R7a-SM-A96S2 60-69 years, male 84.5
GTEX-NPJ7-0011-R7a-SM-EV79B 60-69 years, female 83.4
GTEX-11NV4-0011-R7a-SM-57WDH 60-69 years, male 82.8
GTEX-15DYW-0011-R7a-SM-7KULG 60-69 years, female 82.8
GTEX-13O3O-0011-R7b-SM-5P9GZ 60-69 years, female 82.5
GTEX-13OVJ-0011-R7a-SM-5L3G1 50-59 years, female 82.1
GTEX-1H3NZ-0011-R7a-SM-A9SKD 60-69 years, male 81.2
GTEX-1F75A-0011-R7b-SM-9QEHE 50-59 years, male 80.4
GTEX-1H1DG-0011-R7b-SM-A96RR 70-79 years, male 80.1
GTEX-XLM4-0011-R7A-SM-4AT5L 60-69 years, male 79.9
GTEX-13O3Q-0011-R7a-SM-5KM38 50-59 years, male 79.6
GTEX-1B933-0011-R7a-SM-7DUGX 50-59 years, female 79.4
GTEX-X261-0011-R7A-SM-4E3JJ 50-59 years, male 78.7
GTEX-TSE9-0011-R7A-SM-3DB7P 60-69 years, female 78.0
GTEX-QDT8-0011-R7A-SM-32PKF 30-39 years, female 77.7
GTEX-1GF9W-0011-R7b-SM-9QEIF 60-69 years, male 77.6
GTEX-1H1ZS-0011-R7a-SM-CL54P 70-79 years, male 77.6
GTEX-1LVAO-0011-R7a-SM-EYYWZ 60-69 years, male 77.4
GTEX-1313W-0011-R7b-SM-5DUWL 50-59 years, female 76.9
GTEX-145MH-0011-R7a-SM-5PNWH 50-59 years, male 76.9
GTEX-1GN73-0011-R7a-SM-CJI2U 60-69 years, male 76.8
GTEX-1HCU6-0011-R7b-SM-ARL77 60-69 years, female 76.8
GTEX-1GTWX-0011-R7a-SM-A96RO 60-69 years, male 76.6
GTEX-1H4P4-0011-R7b-SM-ARU77 50-59 years, male 76.6
GTEX-1J8Q2-0011-R7a-SM-CKZPF 60-69 years, male 76.6
GTEX-131YS-0011-R7a-SM-5IJDA 60-69 years, female 75.9
GTEX-1C6WA-0011-R7b-SM-7P8S8 60-69 years, male 75.5
GTEX-1IY9M-0011-R7a-SM-D4P49 60-69 years, male 75.5
GTEX-14PJO-0011-R7a-SM-664NR 60-69 years, male 75.3
GTEX-15CHQ-0011-R7b-SM-D4P1Q 60-69 years, male 75.0
GTEX-12WSI-0011-R7b-SM-5GU78 50-59 years, male 74.4
GTEX-1HCVE-0011-R7b-SM-A9G1I 50-59 years, male 74.2
GTEX-145LS-0011-R7a-SM-5PNWM 60-69 years, female 73.6
GTEX-13N1W-0011-R7b-SM-5MR4F 70-79 years, male 73.0
GTEX-17F97-0011-R7b-SM-7MGVY 50-59 years, male 71.5
GTEX-1I1GS-0011-R7a-SM-CM2T6 60-69 years, male 69.7
GTEX-1IDJH-0011-R7a-SM-A9SM1 70-79 years, male 69.6
GTEX-14C5O-0011-R7b-SM-5YYAH 60-69 years, male 69.4
GTEX-N7MT-0011-R7a-SM-2I3FZ 60-69 years, female 68.7
GTEX-132Q8-0011-R7b-SM-5N9F1 60-69 years, male 68.5
GTEX-17MF6-0011-R7b-SM-7LG6J 40-49 years, male 68.3
GTEX-ZAB4-0011-R7a-SM-4SOKE 40-49 years, male 67.4
GTEX-1LH75-0011-R7a-SM-EXOIF 50-59 years, female 67.3
GTEX-1HT8W-0011-R7b-SM-CMKH8 30-39 years, male 66.1
GTEX-Z93S-0011-R7b-SM-4RGNK 50-59 years, male 64.0
GTEX-1E2YA-0011-R7a-SM-CJI1Z 50-59 years, male 63.4
GTEX-1AX9I-0011-R7b-SM-7P8Q3 60-69 years, male 62.8
GTEX-13FHO-0011-R7b-SM-5LZXD 60-69 years, male 62.0
GTEX-S7SE-0011-R7A-SM-2XCDI 50-59 years, male 59.8
GTEX-16Z82-0011-R7a-SM-7MKGJ 60-69 years, male 59.0
GTEX-1ICLZ-0011-R7a-SM-ARZLU 60-69 years, male 57.7
GTEX-13N2G-0011-R7a-SM-5MR42 60-69 years, male 57.4
GTEX-WL46-0011-R7A-SM-3LK7X 50-59 years, male 57.0
GTEX-17EVP-0011-R7a-SM-7LTAN 40-49 years, male 55.7
GTEX-1B996-0011-R7b-SM-7IGNT 60-69 years, male 55.6
GTEX-14PN4-0011-R7b-SM-69LQQ 50-59 years, male 54.8
GTEX-1J1OQ-0011-R7b-SM-ARU87 40-49 years, female 53.2
GTEX-15RJE-0011-R7a-SM-7DHL9 40-49 years, male 46.3
GTEX-WHSE-0011-R7A-SM-3P5YZ 20-29 years, male 42.2
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PUTAMEN - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 114.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Putamen
Scaled Tags Per Million: 114.7
FF:10176-103C5 60 years, female 114.7

PUTAMEN - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 23.0
Pig sample Sample description nTPM
Putamen
nTPM: 23.0
Samples: 4

Max nTPM: 32.8
Min nTPM: 16.4
Sample A Female 32.8
Sample B Female 16.4
Sample C Male 22.1
Sample D Male 20.7

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