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TISSUE PRIMARY DATA SPINAL CORD Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM ENDOMETRIUM
EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MEDULLA OBLONGATA MIDBRAIN NASOPHARYNX ORAL MUCOSA
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PONS PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE
SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THALAMUS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA WHITE MATTER
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
SPINAL CORD - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:265.0 nTPM
HPA:265.0 nTPM
GTEx:197.2 nTPM
FANTOM5:513.7 Scaled Tags Per Million
Pig:15.7 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max nTPM 265.0
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 231.6
1981 Female, age 72, midline 259.1
2048 Male, age 55, midline 231.9
2565 Male, age 75, midline 228.3
2194 Female, age 79, both hemispheres 222.8
2816 Male, age 47, midline 216.0
Cervical spinal cord, dorsal horn
nTPM: 265.0
2296 Male, age 66, both hemispheres 293.1
2069 Male, age 47, both hemispheres 281.7
2173 Female, age 72, unknown 272.1
1877 Male, age 55, unknown 260.9
2297 Male, age 75, both hemispheres 249.2
2721 Male, age 90, both hemispheres 233.0
Cervical spinal cord, ventral horn
nTPM: 229.2
2098 Female, age 72, unknown 265.8
2068 Male, age 55, unknown 230.2
2480 Male, age 75, both hemispheres 227.9
2295 Male, age 66, both hemispheres 225.8
2809 Male, age 90, both hemispheres 215.0
2820 Female, age 79, both hemispheres 210.6

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 197.2
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 197.2
Samples: 159

Max nTPM: 351.2
Min nTPM: 98.2
Std nTPM: 45.8
Median nTPM: 197.7
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 351.2
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 302.4
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 301.3
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 289.4
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 284.9
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 284.6
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 280.5
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 278.9
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 278.8
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 278.1
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 267.4
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 266.2
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 257.7
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 256.2
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 254.9
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 254.0
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 252.7
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 250.2
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 250.0
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 249.2
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 248.5
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 248.3
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 247.6
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 247.5
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 245.8
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 243.4
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 242.3
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 242.3
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 242.2
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 240.2
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 239.0
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 237.5
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 236.3
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 235.5
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 235.1
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 232.5
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 232.1
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 230.7
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 230.0
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 227.6
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 227.6
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 226.5
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 224.8
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 222.7
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 222.1
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 222.1
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 222.0
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 221.8
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 221.5
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 221.3
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 220.9
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 219.1
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 218.4
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 218.4
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 218.1
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 217.5
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 215.7
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 215.4
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 215.1
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 214.9
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 213.2
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 212.9
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 212.8
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 210.1
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 209.7
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 209.7
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 204.4
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 204.2
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 203.7
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 202.3
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 201.4
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 201.3
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 200.2
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 200.0
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 199.1
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 198.8
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 198.6
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 198.4
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 198.3
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 197.7
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 197.0
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 195.0
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 194.9
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 194.1
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 193.4
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 192.1
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 189.4
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 189.2
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 188.9
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 188.8
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 188.3
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 186.7
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 186.5
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 185.8
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 185.1
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 184.5
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 183.8
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 182.4
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 181.9
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 174.8
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 174.0
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 173.3
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 173.1
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 170.8
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 170.8
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 170.2
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 168.3
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 167.7
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 166.8
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 166.5
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 166.3
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 165.9
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 165.6
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 165.2
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 164.4
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 162.7
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 162.6
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 162.6
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 162.5
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 162.4
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 161.3
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 161.0
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 160.4
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 159.7
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 157.9
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 157.9
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 156.2
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 155.9
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 155.3
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 154.4
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 154.2
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 154.0
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 151.5
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 151.2
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 150.2
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 149.3
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 148.4
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 147.2
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 146.2
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 143.0
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 140.9
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 136.2
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 136.1
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 135.8
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 135.0
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 134.4
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 132.5
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 132.3
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 132.1
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 131.5
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 129.9
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 129.5
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 128.2
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 126.4
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 124.1
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 117.0
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 112.5
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 105.7
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 98.2
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 513.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 513.7
FF:10159-103A6 76 years, female 539.8
FF:10181-103D1 60 years, female 487.6

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 15.7
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 15.1
Samples: 4

Max nTPM: 16.9
Min nTPM: 12.8
Sample A Female 15.6
Sample B Female 15.2
Sample C Male 12.8
Sample D Male 16.9
Ventral spinal cord
nTPM: 15.6
Samples: 4

Max nTPM: 17.7
Min nTPM: 13.3
Sample A Female 14.9
Sample B Female 17.7
Sample C Male 13.3
Sample D Male 16.6

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