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BRAIN HIPPOCAMPUS Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
Brain proteome
HIPPOCAMPUS - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
HPA:230.3 nTPM
GTEx:216.9 nTPM
FANTOM5:205.9 Scaled Tags Per Million

HIPPOCAMPUS - Annotated protein expression
Pending normal tissue analysis

HIPPOCAMPUS - HPA Brain RNA-seq
Avg nTPM 230.3
Sample id Sample description nTPM
Hippocampus
nTPM: 230.3
1911 Female, age 85, right hemisphere 250.9
2529 Female, age 94, left hemisphere 243.5
1898 Male, age 80, left hemisphere 228.8
2621 Female, age 67, right hemisphere 223.5
1855 Male, age 76, left hemisphere 221.0
2148 Female, age 91, left hemisphere 213.8

HIPPOCAMPUS - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 216.9
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 216.9
Samples: 197

Max nTPM: 710.9
Min nTPM: 27.8
Std nTPM: 123.2
Median nTPM: 190.0
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 710.9
GTEX-1H23P-0011-R1a-SM-ACKVC 60-69 years, male 689.1
GTEX-13QIC-0011-R1a-SM-5O9CJ 60-69 years, female 622.8
GTEX-1C6VQ-0011-R1a-SM-7P8Q2 50-59 years, male 600.9
GTEX-1H4P4-0011-R1b-SM-CL54V 50-59 years, male 520.5
GTEX-1LB8K-0011-R1b-SM-EZ6MV 50-59 years, male 500.5
GTEX-17MF6-0011-R1a-SM-72D6O 40-49 years, male 474.8
GTEX-17EVP-0011-R1a-SM-7DHLA 40-49 years, male 472.8
GTEX-13QJC-0011-R1b-SM-5S2UU 60-69 years, female 459.8
GTEX-13JVG-0011-R1a-SM-5KM32 60-69 years, male 457.1
GTEX-15UF6-0011-R1a-SM-9QEGH 70-79 years, female 451.4
GTEX-16NPV-0011-R1b-SM-7MGVZ 50-59 years, female 447.5
GTEX-13NZA-0011-R1b-SM-5LUAF 60-69 years, male 443.9
GTEX-13OVL-0011-R1a-SM-5L3H5 50-59 years, male 422.2
GTEX-17HII-0011-R1b-SM-7MGVW 50-59 years, male 418.0
GTEX-13N1W-0011-R1b-SM-5MR4T 70-79 years, male 415.9
GTEX-13RTJ-0011-R1a-SM-5O9D9 60-69 years, male 415.1
GTEX-13OW5-0011-R1b-SM-5L3GE 60-69 years, male 413.0
GTEX-13RTL-0011-R1a-SM-5PNZ8 40-49 years, male 404.7
GTEX-1E2YA-0011-R1b-SM-CJI29 50-59 years, male 387.9
GTEX-145LU-0011-R1a-SM-5Q5CE 50-59 years, male 387.3
GTEX-1HR98-0011-R1a-SM-ARZLQ 60-69 years, male 383.0
GTEX-UTHO-0011-R1A-SM-3GIJO 60-69 years, male 370.8
GTEX-11TUW-0011-R1a-SM-DO92S 60-69 years, male 353.1
GTEX-1HBPI-0011-R1b-SM-A9SKF 50-59 years, male 351.4
GTEX-1BAJH-0011-R1a-SM-7P8SV 70-79 years, male 351.1
GTEX-1GN2E-0011-R1b-SM-CE6RJ 60-69 years, male 347.9
GTEX-1EH9U-0011-R1b-SM-CJI2B 60-69 years, male 344.1
GTEX-13S7M-0011-R1b-SM-5PNZE 60-69 years, female 343.3
GTEX-17HHY-0011-R1a-SM-7189V 50-59 years, male 340.4
GTEX-14LZ3-0011-R1a-SM-69LP5 60-69 years, female 337.1
GTEX-1CB4J-0011-R1a-SM-9WG64 60-69 years, male 337.1
GTEX-17EVQ-0011-R1a-SM-7189S 70-79 years, male 325.3
GTEX-XMD1-0011-R1A-SM-4AT4C 60-69 years, male 323.3
GTEX-1I1GV-0011-R1a-SM-CL559 60-69 years, male 320.8
GTEX-11ZVC-0011-R1b-SM-5BC6M 50-59 years, female 318.3
GTEX-WZTO-0011-R1B-SM-3NMAR 40-49 years, male 310.9
GTEX-1H3O1-0011-R1b-SM-CL554 60-69 years, male 310.0
GTEX-16GPK-0011-R1b-SM-7EWDH 60-69 years, male 307.7
GTEX-1A32A-0011-R1a-SM-7P8SQ 50-59 years, female 300.2
GTEX-QMR6-0011-R1A-SM-32PKW 50-59 years, male 296.1
GTEX-11UD1-0011-R1b-SM-5BC7D 40-49 years, female 294.6
GTEX-1212Z-0011-R1b-SM-5BC72 60-69 years, male 292.3
GTEX-11GSO-0011-R1b-SM-57WD3 60-69 years, male 290.1
GTEX-ZAB4-0011-R1a-SM-4RGNO 40-49 years, male 284.0
GTEX-13NYS-0011-R1b-SM-5MR55 60-69 years, male 280.9
GTEX-1H1DG-0011-R1b-SM-CKZP1 70-79 years, male 277.4
GTEX-1C64N-0011-R1b-SM-7P8Q7 50-59 years, male 277.0
GTEX-1C6VR-0011-R1a-SM-7MXUE 60-69 years, male 272.7
GTEX-1H1CY-0011-R1a-SM-CKZOZ 60-69 years, female 271.9
GTEX-16XZZ-0011-R1a-SM-7LTAH 60-69 years, male 271.8
GTEX-1HGF4-0011-R1a-SM-CJI3S 60-69 years, male 268.9
GTEX-1EKGG-0011-R1b-SM-9QEI1 60-69 years, male 268.6
GTEX-183WM-0011-R1a-SM-718A8 70-79 years, female 268.4
GTEX-14PJO-0011-R1b-SM-6AJAK 60-69 years, male 266.4
GTEX-14PQA-0011-R1b-SM-6EU1G 50-59 years, female 262.4
GTEX-11ZTS-0011-R1a-SM-5BC71 60-69 years, female 259.4
GTEX-15ER7-0011-R1b-SM-7KUE1 20-29 years, female 259.2
GTEX-1H3VE-0011-R1a-SM-A9G1K 40-49 years, male 257.1
GTEX-1B933-0011-R1b-SM-9QEGW 50-59 years, female 256.4
GTEX-1A8G6-0011-R1a-SM-7P8PC 60-69 years, male 253.7
GTEX-1E1VI-0011-R1a-SM-ARZMM 50-59 years, male 247.8
GTEX-145LS-0011-R1b-SM-5PNUP 60-69 years, female 247.7
GTEX-1I1GS-0011-R1a-SM-CJI43 60-69 years, male 245.4
GTEX-13FHP-0011-R1b-SM-5K7XL 50-59 years, male 245.2
GTEX-1B996-0011-R1b-SM-7P8PO 60-69 years, male 242.3
GTEX-1GN73-0011-R1a-SM-CKZNT 60-69 years, male 240.6
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y 40-49 years, male 238.2
GTEX-11WQC-0011-R1b-SM-DO932 60-69 years, male 237.6
GTEX-12ZZX-0011-R1a-SM-5EQ6B 40-49 years, female 234.1
GTEX-P44H-0011-R1A-SM-3NM8J 40-49 years, male 230.8
GTEX-T6MN-0011-R1A-SM-32QOY 50-59 years, male 230.8
GTEX-12WSH-0011-R1a-SM-5GU5V 50-59 years, male 228.8
GTEX-1IOXB-0011-R1a-SM-D4P27 50-59 years, male 224.7
GTEX-14PJM-0011-R1a-SM-CNPO3 50-59 years, female 224.4
GTEX-1AX9I-0011-R1b-SM-7RHG2 60-69 years, male 223.4
GTEX-13FHO-0011-R1b-SM-5KLZG 60-69 years, male 223.3
GTEX-13OVJ-0011-R1b-SM-5L3I6 50-59 years, female 222.3
GTEX-1B8SF-0011-R1b-SM-7P8Q8 60-69 years, male 222.3
GTEX-1I1GQ-0011-R1a-SM-CY8GG 50-59 years, male 222.3
GTEX-132Q8-0011-R1a-SM-5EGLK 60-69 years, male 221.7
GTEX-ZVZQ-0011-R1a-SM-57WBU 60-69 years, female 221.7
GTEX-1GN1U-0011-R1a-SM-CJI25 50-59 years, female 221.3
GTEX-13G51-0011-R1a-SM-5LZYR 60-69 years, male 218.0
GTEX-14E7W-0011-R1b-SM-5YYAT 70-79 years, male 211.8
GTEX-1H3NZ-0011-R1a-SM-CKZP5 60-69 years, male 211.8
GTEX-1HSMO-0011-R1a-SM-CM2SV 60-69 years, male 211.8
GTEX-144GO-0011-R1a-SM-5PNWO 60-69 years, male 210.9
GTEX-1J8Q2-0011-R1a-SM-D4P2D 60-69 years, male 207.6
GTEX-1CAV2-0011-R1a-SM-ARZML 40-49 years, female 205.2
GTEX-12WSF-0011-R1a-SM-5DUVI 70-79 years, male 202.2
GTEX-17JCI-0011-R1b-SM-718A3 60-69 years, female 202.0
GTEX-OHPN-0011-R1A-SM-2I5GB 60-69 years, female 199.7
GTEX-13N2G-0011-R1b-SM-5MR3G 60-69 years, male 199.1
GTEX-13OW6-0011-R1a-SM-5L3HQ 50-59 years, male 198.8
GTEX-ZUA1-0011-R1a-SM-4YCE2 40-49 years, male 192.7
GTEX-NPJ8-0011-R1a-SM-33HCB 40-49 years, male 192.1
GTEX-1GTWX-0011-R1a-SM-CE6RL 60-69 years, male 191.4
GTEX-1HSKV-0011-R1b-SM-CMKH7 60-69 years, male 190.0
GTEX-1F6IF-0011-R1b-SM-9WG78 60-69 years, male 188.2
GTEX-1399T-0011-R1b-SM-5DUWN 60-69 years, male 187.3
GTEX-13OW8-0011-R1a-SM-5L3HI 60-69 years, male 186.3
GTEX-13CF2-0011-R1a-SM-5LZY1 60-69 years, male 185.7
GTEX-12WSD-0011-R1b-SM-5LZVY 60-69 years, female 185.2
GTEX-13FXS-0011-R1a-SM-5K7U6 50-59 years, male 181.7
GTEX-15CHQ-0011-R1a-SM-COH27 60-69 years, male 178.4
GTEX-12WSM-0011-R1a-SM-5LZW6 60-69 years, male 178.3
GTEX-13FTY-0011-R1a-SM-5LZXE 40-49 years, female 178.1
GTEX-ZE7O-0011-R1a-SM-57WDM 50-59 years, female 177.3
GTEX-1GF9V-0011-R1a-SM-CKZNQ 60-69 years, male 173.2
GTEX-11DXW-0011-R1a-SM-DNZZD 40-49 years, male 172.0
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 170.6
GTEX-1313W-0011-R1b-SM-5EQ4A 50-59 years, female 170.2
GTEX-1F6I4-0011-R1a-SM-9OSWU 60-69 years, male 166.9
GTEX-13OW7-0011-R1b-SM-5L3HF 50-59 years, male 166.2
GTEX-1B8L1-0011-R1a-SM-7P8SS 60-69 years, male 162.3
GTEX-17HG3-0011-R1a-SM-7LG6H 30-39 years, female 161.7
GTEX-WL46-0011-R1A-SM-3LK6M 50-59 years, male 161.1
GTEX-X4XX-0011-R1B-SM-3P622 60-69 years, male 160.4
GTEX-1F75W-0011-R1a-SM-ARU81 60-69 years, male 160.0
GTEX-Q2AG-0011-R1A-SM-2HMJI 40-49 years, female 158.9
GTEX-13NYB-0011-R1b-SM-5KM4F 40-49 years, male 156.5
GTEX-N7MT-0011-R1a-SM-CNPO1 60-69 years, female 156.4
GTEX-13NZ8-0011-R1b-SM-5KM3V 60-69 years, female 155.2
GTEX-1CB4G-0011-R1b-SM-9QEHT 60-69 years, male 153.6
GTEX-TSE9-0011-R1A-SM-3DB7E 60-69 years, female 153.5
GTEX-13112-0011-R1b-SM-5HL7K 50-59 years, male 152.7
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 150.6
GTEX-1GMR8-0011-R1b-SM-CJI2O 50-59 years, female 150.5
GTEX-13X6I-0011-R1b-SM-5PNZC 60-69 years, male 148.6
GTEX-13SLW-0011-R1a-SM-5S2W7 70-79 years, male 148.0
GTEX-YJ89-0011-R1a-SM-4RGLS 60-69 years, male 147.1
GTEX-15DCD-0011-R1b-SM-6LPIJ 70-79 years, female 146.9
GTEX-14C5O-0011-R1b-SM-6AJBW 60-69 years, male 145.9
GTEX-PWO3-0011-R1A-SM-2I5EW 60-69 years, female 145.0
GTEX-1GF9W-0011-R1a-SM-9QEIQ 60-69 years, male 143.4
GTEX-ZDXO-0011-R1a-SM-4WKF4 60-69 years, male 140.6
GTEX-1EX96-0011-R1a-SM-CE6R5 50-59 years, male 136.1
GTEX-1H1ZS-0011-R1b-SM-A9G1E 70-79 years, male 134.0
GTEX-ZF28-0011-R1a-SM-4WWD1 60-69 years, male 133.7
GTEX-14E6D-0011-R1b-SM-5YYAW 50-59 years, male 130.3
GTEX-16Z82-0011-R1b-SM-7EPHZ 60-69 years, male 130.3
GTEX-1F48J-0011-R1a-SM-9QEIC 50-59 years, female 130.2
GTEX-14ABY-0011-R1a-SM-6EU2W 50-59 years, male 130.1
GTEX-13JUV-0011-R1a-SM-5LZY4 40-49 years, female 129.7
GTEX-WVLH-0011-R1A-SM-4MVOK 50-59 years, male 127.0
GTEX-N7MS-0011-R1a-SM-2HMJG 60-69 years, male 126.3
GTEX-11ONC-0011-R1a-SM-57WD4 60-69 years, male 124.1
GTEX-13O3Q-0011-R1b-SM-5KM3L 50-59 years, male 123.9
GTEX-QDT8-0011-R1A-SM-32PKS 30-39 years, female 122.6
GTEX-1A3MX-0011-R1b-SM-7P8PH 60-69 years, male 122.1
GTEX-1IDJH-0011-R1b-SM-ARU6U 70-79 years, male 121.0
GTEX-1F75A-0011-R1b-SM-CE6RA 50-59 years, male 117.7
GTEX-QVUS-0011-R1A-SM-3GAD2 60-69 years, female 116.8
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 115.2
GTEX-PVOW-0011-R1A-SM-32PL6 40-49 years, male 114.0
GTEX-13PDP-0011-R1a-SM-5PNX5 60-69 years, male 113.3
GTEX-Y8DK-0011-R1A-SM-4RGLO 60-69 years, male 112.5
GTEX-14ASI-0011-R1b-SM-5S2TY 60-69 years, male 112.4
GTEX-11EI6-0011-R1a-SM-DO93L 60-69 years, male 112.2
GTEX-NPJ7-0011-R1a-SM-3GACT 60-69 years, female 110.9
GTEX-1IKK5-0011-R1b-SM-CE6SQ 60-69 years, male 110.5
GTEX-QVJO-0011-R1A-SM-2S1QI 60-69 years, female 109.0
GTEX-1ICLZ-0011-R1b-SM-A9SM3 60-69 years, male 107.6
GTEX-WHSE-0011-R1A-SM-3P5ZK 20-29 years, male 106.8
GTEX-131YS-0011-R1a-SM-5DUXC 60-69 years, female 106.1
GTEX-139TT-0011-R1a-SM-5LZVD 60-69 years, male 105.0
GTEX-16YQH-0011-R1a-SM-7LT8R 30-39 years, male 104.7
GTEX-1IY9M-0011-R1a-SM-EXURZ 60-69 years, male 103.7
GTEX-1I1HK-0011-R1b-SM-CM2T7 60-69 years, male 101.8
GTEX-11GSP-0011-R1a-SM-9QEJ3 60-69 years, female 100.1
GTEX-1LG7Y-0011-R1a-SM-EYYWV 50-59 years, male 97.7
GTEX-T5JC-0011-R1A-SM-32PM6 20-29 years, male 97.2
GTEX-13FLW-0011-R1b-SM-5LZX2 50-59 years, male 97.1
GTEX-1GZHY-0011-R1a-SM-CE6RR 50-59 years, female 95.6
GTEX-1EMGI-0011-R1b-SM-9OSWZ 60-69 years, male 95.5
GTEX-17F97-0011-R1b-SM-7IGM9 50-59 years, male 93.9
GTEX-NL3H-0011-R1a-SM-48TDJ 60-69 years, male 90.1
GTEX-14PN4-0011-R1b-SM-69LP8 50-59 years, male 89.7
GTEX-S7SE-0011-R1A-SM-2XCDE 50-59 years, male 89.3
GTEX-YFC4-0011-R1a-SM-4V6EH 40-49 years, female 87.9
GTEX-WWYW-0011-R1A-SM-3TW8G 50-59 years, female 81.5
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 77.0
GTEX-RNOR-0011-R1A-SM-CNNP5 50-59 years, female 75.7
GTEX-R55E-0011-R1A-SM-2TC6N 20-29 years, male 75.0
GTEX-14JIY-0011-R1a-SM-68713 60-69 years, male 72.3
GTEX-1J1OQ-0011-R1a-SM-A9G1Z 40-49 years, female 70.5
GTEX-X585-0011-R1B-SM-46MVE 50-59 years, male 69.9
GTEX-12WSE-0011-R1b-SM-5GU4V 20-29 years, male 69.4
GTEX-P44G-0011-R1A-SM-2I3FE 30-39 years, male 68.1
GTEX-139T8-0011-R1a-SM-5HL75 60-69 years, male 66.7
GTEX-131XH-0011-R1a-SM-5DUWA 50-59 years, male 61.9
GTEX-11GS4-0011-R1a-SM-DO129 60-69 years, male 59.7
GTEX-1EWIQ-0011-R1a-SM-9OSX7 70-79 years, female 55.7
GTEX-14BIM-0011-R1a-SM-69LQI 60-69 years, female 55.2
GTEX-145MH-0011-R1b-SM-5PNWY 50-59 years, male 42.1
GTEX-X4EP-0011-R1A-SM-3P624 60-69 years, female 27.8
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HIPPOCAMPUS - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 205.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 205.9
FF:10153-102I9 76 years, female 242.4
FF:10169-103B7 60 years, female 169.5

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