MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:156.5 nTPM
HPA:156.5 nTPM
GTEx:145.2 nTPM
FANTOM5:22.9 Scaled Tags Per Million
Pig:240.1 nTPM
Mouse:379.9 nTPM
Allen mouse:20.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 156.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 60.6
2666 Male, age 74, left hemisphere 143.7
2219 Male, age 76, both hemispheres 92.4
1827 Male, age 72, unknown 75.5
2828 Female, age 72, unknown 61.0
2411 Female, age 72, unknown 60.9
1870 Female, age 42, unknown 58.6
2019 Male, age 18, unknown 36.5
2586 Male, age 75, left hemisphere 32.5
1833 Male, age 53, unknown 28.0
1830 Male, age 51, unknown 16.4
Dorsal raphe nucleus
nTPM: 59.8
2750 Male, age 76, both hemispheres 110.3
2298 Female, age 72, unknown 101.0
2047 Male, age 72, unknown 52.3
1828 Male, age 53, unknown 22.4
2016 Female, age 72, unknown 12.9
Inferior colliculus
nTPM: 14.9
2849 Male, age 72, unknown 19.2
2097 Female, age 72, unknown 18.8
1848 Female, age 42, unknown 14.3
1890 Male, age 53, unknown 7.5
Median raphe nucleus
nTPM: 156.5
2220 Male, age 76, midline 156.5
Pedunculopontine tegmental nucleus
nTPM: 73.3
1921 Female, age 85, both hemispheres 100.9
2334 Male, age 80, both hemispheres 70.2
2338 Male, age 61, both hemispheres 48.8
Periaquaductal grey, anterior
nTPM: 77.8
1795 Male, age 51, unknown 128.0
1947 Male, age 18, unknown 74.1
2502 Female, age 75, unknown 31.3
Periaquaductal grey, dorsal
nTPM: 46.9
2850 Male, age 76, both hemispheres 68.0
1840 Male, age 53, unknown 57.1
1831 Male, age 72, unknown 36.9
2464 Female, age 72, unknown 25.3
Periaquaductal grey, lateral
nTPM: 29.8
2140 Male, age 76, both hemispheres 36.1
2053 Male, age 18, unknown 26.7
2272 Male, age 74, both hemispheres 26.7
Pretectal area
nTPM: 83.5
1815 Male, age 53, unknown 150.4
1817 Female, age 42, unknown 144.6
1816 Male, age 51, unknown 140.6
1944 Female, age 72, unknown 128.6
2007 Male, age 72, unknown 112.0
2224 Female, age 72, unknown 81.8
2667 Female, age 75, unknown 79.8
2825 Male, age 18, unknown 34.6
2407 Male, age 75, both hemispheres 23.9
2316 Male, age 76, right hemisphere 14.4
2273 Male, age 74, both hemispheres 7.9
Red nucleus
nTPM: 7.1
2584 Male, age 75, left hemisphere 48.7
2785 Male, age 18, unknown 36.8
1821 Female, age 72, unknown 0.0
1865 Male, age 51, unknown 0.0
1904 Male, age 53, unknown 0.0
1954 Female, age 42, unknown 0.0
2227 Male, age 72, unknown 0.0
2503 Female, age 72, unknown 0.0
2588 Male, age 74, left hemisphere 0.0
2725 Female, age 75, unknown 0.0
2769 Male, age 72, unknown 0.0
2823 Male, age 76, right hemisphere 0.0
Substantia nigra
nTPM: 57.9
2665 Male, age 74, both hemispheres 96.1
1889 Female, age 72, unknown 83.3
1916 Female, age 42, unknown 81.7
1851 Male, age 51, unknown 70.2
2241 Male, age 72, unknown 68.3
1941 Male, age 53, unknown 53.0
2409 Female, age 72, unknown 51.0
2583 Male, age 75, right hemisphere 37.7
2699 Male, age 18, unknown 21.8
2590 Female, age 75, unknown 16.1
Superior colliculus
nTPM: 56.6
2668 Female, age 75, unknown 178.3
1796 Male, age 53, unknown 99.9
2087 Female, age 72, unknown 92.6
2261 Male, age 18, unknown 50.9
1913 Female, age 42, unknown 42.0
1839 Male, age 51, unknown 28.3
1895 Male, age 76, right hemisphere 22.6
1995 Male, age 72, unknown 20.9
2664 Male, age 75, both hemispheres 18.9
2587 Male, age 74, left hemisphere 11.7
Ventral tegmental area
nTPM: 76.4
2218 Male, age 76, both hemispheres 136.0
1942 Male, age 51, unknown 82.3
1915 Female, age 42, unknown 79.6
2021 Male, age 53, unknown 64.4
2410 Female, age 72, unknown 57.7
2223 Female, age 72, unknown 38.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 145.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 145.2
Samples: 139

Max nTPM: 556.5
Min nTPM: 10.6
Std nTPM: 128.1
Median nTPM: 89.6
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 556.5
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 515.6
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 504.1
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 493.6
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 491.0
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 427.7
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 417.9
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 410.8
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 398.5
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 391.8
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 380.0
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 22.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 22.9
FF:10158-103A5 76 years, female 22.9

MIDBRAIN - Pig RNA-seqi
Average nTPM 240.1
Pig sample Sample description nTPM
Midbrain
nTPM: 230.4
Samples: 4

Max nTPM: 384.2
Min nTPM: 33.2
Sample A Female 33.2
Sample B Female 234.8
Sample C Male 384.2
Sample D Male 269.3
Periaqueductal gray
nTPM: 240.1
Samples: 3

Max nTPM: 326.4
Min nTPM: 190.3
Sample B Female 190.3
Sample C Male 326.4
Sample D Male 203.6
Substantia nigra
nTPM: 210.2
Samples: 4

Max nTPM: 341.9
Min nTPM: 61.7
Sample A Female 285.1
Sample B Female 151.9
Sample C Male 341.9
Sample D Male 61.7
Superior colliculi
nTPM: 204.3
Samples: 4

Max nTPM: 287.9
Min nTPM: 96.0
Sample A Female 287.9
Sample B Female 96.0
Sample C Male 223.5
Sample D Male 209.7

MIDBRAIN - Mouse RNA-seqi
Average nTPM 379.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 380.0
Samples: 4

Max nTPM: 403.6
Min nTPM: 352.4
Sample A Male 394.2
Sample B Male 369.6
Sample C Female 352.4
Sample D Female 403.6

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 20.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 20.0
79669511 Antisense, RP_071204_01_C11, Mouse strain C57BL/6J (56 days, male) 22.5
70928270 Antisense, RP_050725_02_C05, Mouse strain C57BL/6J (56 days, male) 17.5

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.