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GAP43
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  • GAP43
BRAIN THALAMUS Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
PRIMARY MOUSE DATA
ANTIBODIES
AND
VALIDATION
Brain proteome
Thalamus
THALAMUS - Expression summary
Mouse brain, Intensity
Thalamusi

Protein expression in mouse brain using immunofluorescence is reported as mean fluorescence intensity .

Read more
71.867
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:150.7 nTPM
HPA:150.7 nTPM
FANTOM5:65.5 Scaled Tags Per Million
Pig:414.4 nTPM
Mouse:355.9 nTPM
Allen mouse:20.0 Expression energy

THALAMUS - Mouse brain profilei

Protein expression in mouse brain using immunofluorescence is reported as fluorescence intensity .

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, antibody CAB078783
Thalamus mean intensity 71.867
intensityi

Protein expression in mouse brain using immunofluorescence is reported as mean fluorescence intensity .

Read more
FRONT BACK
Medial geniculate nucleus 71.867
Parafascicular thalamic nucleus 45.900
Pregeniculate nucleus 43.190
Stria terminalis 38.905
Zona incerta 60.788
Anterodorsal thalamic nucleus 38.710
Reticular thalamic nucleus 37.504
Vental anterior thalamic nucleus 49.347
Medial habenular nucleus 54.585
Laterodorsal thalamic area 46.530
Paraventricular thalamic nucleus 40.383
Central medial thalamic area 56.052
Ventral lateral thalamic area -
Ventral medial thalamic area 64.297
Lateral habenulal nucleus 50.072
Ventral posterior thalamus 44.788
Anterior pretactal nucleus 21.290
Retromammillary nucleus 41.158

THALAMUS - HPA Brain RNA-seq
Max nTPM 150.7
Sample id Sample description nTPM
Anterior thalamic nucleus, ventral
nTPM: 121.7
2396 Male, age 61, right hemisphere 180.6
2032 Female, age 42, unknown 99.4
2497 Male, age 66, unknown 85.0
Centromedial thalamic nucleus
nTPM: 89.1
2401 Male, age 76, right hemisphere 178.2
2279 Female, age 85, left hemisphere 0.0
Habenula
nTPM: 150.7
1957 Male, age 80, both hemispheres 199.1
2203 Male, age 61, left hemisphere 163.1
2276 Male, age 66, unknown 154.5
2252 Male, age 62, unknown 86.0
Lateral geniculate body
nTPM: 92.6
2106 Female, age 67, right hemisphere 201.9
1953 Male, age 62, unknown 201.2
2399 Male, age 61, left hemisphere 120.2
2035 Female, age 72, unknown 114.3
2857 Male, age 74, right hemisphere 54.7
2659 Male, age 66, unknown 30.3
2841 Male, age 80, both hemispheres 18.0
2575 Female, age 94, right hemisphere 0.0
Lateral thalamic nuclei
nTPM: 80.2
1903 Male, age 76, left hemisphere 166.6
2577 Male, age 74, both hemispheres 81.7
2661 Female, age 72, unknown 67.7
2765 Female, age 67, both hemispheres 66.2
2573 Female, age 94, left hemisphere 18.8
Medial dorsal thalamic nucleus
nTPM: 120.0
1971 Male, age 61, right hemisphere 236.9
2498 Male, age 66, unknown 220.0
1859 Male, age 76, both hemispheres 163.5
2026 Male, age 62, unknown 151.2
2283 Male, age 80, right hemisphere 126.4
2039 Female, age 72, unknown 117.7
1810 Male, age 48, unknown 113.9
2492 Male, age 75, right hemisphere 94.6
2576 Male, age 74, both hemispheres 91.3
1930 Female, age 42, unknown 84.3
2660 Female, age 72, unknown 81.1
2402 Female, age 67, both hemispheres 55.1
2572 Female, age 94, right hemisphere 23.9
Medial geniculate body
nTPM: 69.5
1811 Female, age 42, unknown 141.7
2207 Male, age 80, right hemisphere 107.8
2217 Female, age 72, unknown 80.9
2657 Male, age 74, right hemisphere 60.8
2650 Female, age 94, left hemisphere 53.7
2049 Male, age 76, both hemispheres 30.3
2571 Male, age 75, right hemisphere 11.3
Nucleus reuniens
nTPM: 105.8
2212 Female, age 67, left hemisphere 257.7
2205 Male, age 80, left hemisphere 59.6
2210 Female, age 85, left hemisphere 0.0
Nucleus rhomboideus
nTPM: 74.6
2206 Male, age 80, both hemispheres 191.6
2213 Female, age 67, left hemisphere 32.3
2280 Female, age 85, left hemisphere 0.0
Posterior thalamic nucleus
nTPM: 59.5
2266 Male, age 76, right hemisphere 117.2
2655 Male, age 74, right hemisphere 57.7
2495 Female, age 67, right hemisphere 55.7
2649 Female, age 94, both hemispheres 7.5
Pulvinar
nTPM: 106.1
1972 Male, age 62, unknown 162.0
1932 Male, age 80, right hemisphere 132.6
2214 Male, age 76, right hemisphere 128.6
2582 Female, age 72, unknown 117.1
2398 Male, age 61, left hemisphere 108.1
1929 Male, age 48, unknown 107.6
2496 Female, age 67, right hemisphere 87.8
1899 Female, age 42, unknown 86.2
2724 Male, age 74, right hemisphere 73.0
2499 Male, age 66, unknown 57.9
Subthalamic nucleus
nTPM: 55.6
2406 Female, age 72, unknown 133.1
2275 Male, age 66, unknown 81.7
2779 Female, age 42, unknown 67.7
2658 Male, age 74, both hemispheres 51.8
2282 Male, age 61, both hemispheres 43.0
2216 Male, age 48, unknown 31.4
2124 Male, age 62, unknown 25.6
2056 Female, age 72, unknown 10.4
Ventral posterolateral thalamic nucleus
nTPM: 97.1
2397 Male, age 61, right hemisphere 142.3
2740 Male, age 76, right hemisphere 139.6
2197 Male, age 80, both hemispheres 123.5
2578 Male, age 74, both hemispheres 86.0
2581 Female, age 72, unknown 71.3
2570 Male, age 75, right hemisphere 19.7
Ventral posteromedial thalamic nucleus
nTPM: 101.9
2202 Male, age 61, left hemisphere 167.0
2758 Male, age 80, both hemispheres 136.9
2653 Male, age 74, both hemispheres 98.0
2127 Male, age 76, right hemisphere 88.3
2281 Male, age 75, right hemisphere 19.3
Ventral thalamic nuclei
nTPM: 89.6
1860 Male, age 76, both hemispheres 149.5
1845 Male, age 48, unknown 106.2
2204 Male, age 80, both hemispheres 105.0
1912 Female, age 42, unknown 104.6
2285 Male, age 62, unknown 101.1
2652 Male, age 74, left hemisphere 76.4
2858 Female, age 72, unknown 72.5
2291 Female, age 72, unknown 60.6
2580 Male, age 66, unknown 30.4
Ventromedial nucleus
nTPM: 106.9
1982 Female, age 72, unknown 121.3
1822 Female, age 42, unknown 92.5
Zona incerta
nTPM: 73.1
2663 Female, age 72, unknown 150.2
2208 Male, age 80, right hemisphere 107.2
2215 Male, age 66, unknown 48.2
2822 Male, age 74, right hemisphere 34.8
2403 Male, age 62, unknown 25.3

THALAMUS - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

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Max Scaled Tags Per Million 65.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Thalamus
Scaled Tags Per Million: 65.5
FF:10154-103A1 76 years, female 65.5

THALAMUS - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
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Average nTPM 414.4
Pig sample Sample description nTPM
Thalamus
nTPM: 414.4
Samples: 4

Max nTPM: 876.7
Min nTPM: 128.6
Sample A Female 876.7
Sample B Female 151.2
Sample C Male 501.0
Sample D Male 128.6

THALAMUS - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 355.9
Mouse sample Sample description nTPM
Thalamus
nTPM: 355.9
Samples: 4

Max nTPM: 373.7
Min nTPM: 326.1
Sample A Male 357.3
Sample B Male 373.7
Sample C Female 326.1
Sample D Female 366.5

THALAMUS - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 20.0
Allen experiment id Experiment description Expression energy
Thalamus
Expression energy: 20.0
79669511 Antisense, RP_071204_01_C11, Mouse strain C57BL/6J (56 days, male) 22.6
70928270 Antisense, RP_050725_02_C05, Mouse strain C57BL/6J (56 days, male) 17.5

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The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.