BASAL GANGLIA - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:47.6 nTPM
HPA:47.6 nTPM
GTEx:75.9 nTPM
FANTOM5:231.3 Scaled Tags Per Million
Pig:59.0 nTPM
Mouse:169.8 nTPM
Allen mouse:4.7 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 47.6
Sample id Sample description nTPM
Caudate nucleus
nTPM: 47.6
2290 Female, age 72, unknown 60.2
2481 Female, age 94, left hemisphere 59.9
2289 Male, age 61, right hemisphere 55.4
2288 Male, age 75, left hemisphere 47.2
1857 Female, age 85, left hemisphere 46.4
1854 Male, age 80, left hemisphere 43.6
1781 Male, age 74, unknown 35.7
2846 Female, age 79, unknown 32.9
Claustrum
nTPM: 28.8
2645 Female, age 72, unknown 30.8
2198 Male, age 80, both hemispheres 30.3
2392 Female, age 94, both hemispheres 29.9
2284 Female, age 91, both hemispheres 29.7
2491 Male, age 75, both hemispheres 29.2
2568 Male, age 61, both hemispheres 28.0
1956 Male, age 74, unknown 27.9
2196 Female, age 79, unknown 27.5
2292 Female, age 85, both hemispheres 25.7
Globus pallidus, externus
nTPM: 36.0
2646 Male, age 61, right hemisphere 44.1
1996 Male, age 80, right hemisphere 43.7
2772 Female, age 79, unknown 34.0
2395 Male, age 75, both hemispheres 30.6
2567 Female, age 72, unknown 27.8
Globus pallidus, internus
nTPM: 37.5
2483 Female, age 94, right hemisphere 48.0
1818 Male, age 74, unknown 39.8
2037 Male, age 80, right hemisphere 38.8
2287 Male, age 75, right hemisphere 37.0
2778 Female, age 91, both hemispheres 35.7
2111 Female, age 85, right hemisphere 34.1
2566 Female, age 72, unknown 29.1
Nucleus accumbens
nTPM: 39.7
2286 Male, age 75, left hemisphere 48.2
2732 Male, age 80, right hemisphere 44.7
1806 Female, age 85, left hemisphere 42.2
1856 Female, age 91, right hemisphere 38.2
2698 Female, age 72, unknown 37.4
2391 Female, age 94, left hemisphere 36.8
1783 Male, age 74, unknown 35.8
2824 Male, age 61, right hemisphere 34.1
Nucleus basalis of Meynert
nTPM: 37.6
2569 Male, age 61, both hemispheres 47.5
2393 Male, age 80, right hemisphere 37.5
2484 Female, age 94, left hemisphere 35.8
2821 Male, age 75, both hemispheres 29.6
Nucleus of the diagonal band
nTPM: 41.5
1979 Male, age 74, unknown 56.2
1812 Female, age 91, both hemispheres 41.3
2775 Male, age 80, right hemisphere 40.0
2195 Female, age 85, both hemispheres 37.9
2029 Male, age 61, right hemisphere 31.9
Olfactory tubercle
nTPM: 37.7
1846 Male, age 80, right hemisphere 42.2
2856 Male, age 75, right hemisphere 41.9
2487 Female, age 94, left hemisphere 36.5
1998 Female, age 91, both hemispheres 30.2
Putamen
nTPM: 36.4
2647 Male, age 75, left hemisphere 41.4
2482 Female, age 94, left hemisphere 41.2
2489 Female, age 72, unknown 36.6
1829 Male, age 74, unknown 35.7
1838 Male, age 80, right hemisphere 34.5
1937 Female, age 91, right hemisphere 34.2
2466 Female, age 79, unknown 31.0
Septal nuclei
nTPM: 43.8
2199 Male, age 80, right hemisphere 63.7
2059 Female, age 85, both hemispheres 46.6
2009 Female, age 91, both hemispheres 44.1
2629 Female, age 94, right hemisphere 40.4
1960 Male, age 74, unknown 38.3
2394 Male, age 61, left hemisphere 36.9
2031 Female, age 72, unknown 36.6

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 75.9
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 75.9
Samples: 246

Max nTPM: 162.6
Min nTPM: 16.7
Std nTPM: 27.8
Median nTPM: 72.8
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 162.6
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 160.6
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 159.8
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 158.6
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 149.1
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 141.7
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 140.5
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 137.1
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 137.0
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 136.3
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 134.0
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 59.7
Samples: 246

Max nTPM: 193.0
Min nTPM: 16.4
Std nTPM: 28.0
Median nTPM: 53.5
GTEX-1RLM8-0011-R6a-SM-EYYXS 50-59 years, male 193.0
GTEX-14753-0011-R6b-SM-5S2UD 60-69 years, male 192.9
GTEX-15EO6-0011-R6a-SM-7KULK 50-59 years, male 154.5
GTEX-12584-0011-R6a-SM-5NQ7C 40-49 years, male 143.1
GTEX-ZV68-0011-R6a-SM-51MSR 50-59 years, female 141.2
GTEX-145MI-0011-R6a-SM-5PNZA 60-69 years, female 138.2
GTEX-1A8G6-0011-R6b-SM-7P8PE 60-69 years, male 134.5
GTEX-ZVT3-0011-R6a-SM-51MSU 60-69 years, female 130.1
GTEX-1CB4H-0011-R6b-SM-CKZNK 60-69 years, female 126.7
GTEX-131XW-0011-R6b-SM-5K7XY 50-59 years, female 125.5
GTEX-14PHW-0011-R6b-SM-5YYAR 60-69 years, female 122.4
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Brain - Putamen (basal ganglia)
Average nTPM: 52.0
Samples: 205

Max nTPM: 150.0
Min nTPM: 10.8
Std nTPM: 23.3
Median nTPM: 49.6
GTEX-1LVA9-0011-R7a-SM-EYYWG 50-59 years, male 150.0
GTEX-1F52S-0011-R7b-SM-9QEH8 60-69 years, female 128.5
GTEX-1A8G6-0011-R7b-SM-7MXTV 60-69 years, male 122.2
GTEX-13OVL-0011-R7a-SM-5P9GW 50-59 years, male 113.2
GTEX-1EH9U-0011-R7a-SM-9QEGU 60-69 years, male 112.6
GTEX-1MA7X-0011-R7b-SM-EYYWS 60-69 years, male 109.3
GTEX-ZV68-0011-R7a-SM-51MT4 50-59 years, female 107.0
GTEX-1GN2E-0011-R7b-SM-9QEIJ 60-69 years, male 103.0
GTEX-1EX96-0011-R7a-SM-9OSVW 50-59 years, male 99.1
GTEX-1EU9M-0011-R7b-SM-9OSVU 60-69 years, male 95.4
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 91.0
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 231.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 231.3
FF:10164-103B2 76 years, female 231.3
Globus pallidus
Scaled Tags Per Million: 95.5
FF:10175-103C4 60 years, female 99.4
FF:10161-103A8 76 years, female 91.6
Nucleus accumbens
Scaled Tags Per Million: 164.9
FF:10037-101F1 23-56 years, mixed 164.9
Putamen
Scaled Tags Per Million: 133.3
FF:10176-103C5 60 years, female 133.3

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 59.0
Pig sample Sample description nTPM
Caudate
nTPM: 58.9
Samples: 4

Max nTPM: 67.5
Min nTPM: 52.3
Sample A Female 56.7
Sample B Female 52.3
Sample C Male 67.5
Sample D Male 59.2
Putamen
nTPM: 42.4
Samples: 4

Max nTPM: 50.7
Min nTPM: 34.9
Sample A Female 50.7
Sample B Female 34.9
Sample C Male 45.1
Sample D Male 38.7
Septum
nTPM: 54.0
Samples: 4

Max nTPM: 63.9
Min nTPM: 39.7
Sample A Female 52.5
Sample B Female 39.7
Sample C Male 59.7
Sample D Male 63.9
Ventral pallidum
nTPM: 44.6
Samples: 4

Max nTPM: 50.5
Min nTPM: 40.6
Sample A Female 46.6
Sample B Female 40.6
Sample C Male 40.8
Sample D Male 50.5

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 169.8
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 169.8
Samples: 4

Max nTPM: 205.6
Min nTPM: 138.5
Sample A Male 205.6
Sample B Male 171.4
Sample C Female 138.5
Sample D Female 163.7
Septum
nTPM: 107.2
Samples: 4

Max nTPM: 125.2
Min nTPM: 73.5
Sample A Male 73.5
Sample B Male 125.2
Sample C Female 111.4
Sample D Female 118.5
Ventral forebrain
nTPM: 86.9
Samples: 4

Max nTPM: 91.2
Min nTPM: 78.8
Sample A Male 91.2
Sample B Male 87.3
Sample C Female 90.3
Sample D Female 78.8

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 4.7
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 4.7
73497044 Antisense, RP_051019_04_B09, Mouse strain C57BL/6J (56 days, male) 9.5
74357547 Antisense, RP_051019_04_B09, Mouse strain C57BL/6J (56 days, male) 9.1
70794013 Antisense, RP_050712_01_B10, Mouse strain C57BL/6J (56 days, male) 0.0
Pallidum
Expression energy: 2.6
73497044 Antisense, RP_051019_04_B09, Mouse strain C57BL/6J (56 days, male) 5.3
74357547 Antisense, RP_051019_04_B09, Mouse strain C57BL/6J (56 days, male) 1.8
70794013 Antisense, RP_050712_01_B10, Mouse strain C57BL/6J (56 days, male) 0.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
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