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CFL1
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BRAIN PONS Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Pons
PONS - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
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Consensus:622.1 nTPM
HPA:622.1 nTPM
FANTOM5:1164.2 Scaled Tags Per Million
Allen mouse:0.1 Expression energy

PONS - HPA Brain RNA-seq
Max nTPM 622.1
Sample id Sample description nTPM
Anterior cochlear nucleus, ventral
nTPM: 567.3
2188 Female, age 91, both hemispheres 597.1
2301 Female, age 85, both hemispheres 575.9
2090 Male, age 80, both hemispheres 571.4
1984 Male, age 76, both hemispheres 524.9
Dorsal cochlear nucleus
nTPM: 556.6
2187 Female, age 91, both hemispheres 594.7
2802 Male, age 74, right hemisphere 556.1
2370 Male, age 61, both hemispheres 553.4
2378 Male, age 80, both hemispheres 542.5
2058 Male, age 76, both hemispheres 536.1
Dorsal tegmental nucleus
nTPM: 572.4
2358 Male, age 61, both hemispheres 632.0
2083 Male, age 80, both hemispheres 583.2
2326 Male, age 74, both hemispheres 556.6
1936 Male, age 76, left hemisphere 517.8
Dorsolateral tegmental area
nTPM: 564.9
2337 Male, age 61, both hemispheres 638.5
2654 Male, age 80, both hemispheres 579.6
2751 Female, age 85, both hemispheres 560.5
2360 Male, age 74, both hemispheres 529.7
2141 Male, age 76, both hemispheres 516.3
Kolliker-Fuse nucleus
nTPM: 582.3
2163 Male, age 80, both hemispheres 596.4
2793 Female, age 91, left hemisphere 595.3
2315 Male, age 76, right hemisphere 555.2
Lateral lemniscal nuclei
nTPM: 564.7
2169 Male, age 76, both hemispheres 603.4
2746 Female, age 85, left hemisphere 586.0
2453 Male, age 74, right hemisphere 562.9
2320 Female, age 91, left hemisphere 539.0
2036 Male, age 80, both hemispheres 532.2
Lateral parabrachial nucleus
nTPM: 571.4
2139 Female, age 85, right hemisphere 609.7
2013 Male, age 80, both hemispheres 574.8
2792 Male, age 76, both hemispheres 569.6
2790 Male, age 61, both hemispheres 531.4
Lateral vestibular nucleus
nTPM: 575.6
2311 Male, age 80, both hemispheres 576.5
2184 Male, age 76, both hemispheres 574.7
Locus coeruleus
nTPM: 581.0
2123 Female, age 91, both hemispheres 649.6
2720 Male, age 74, both hemispheres 598.4
2014 Male, age 55, unknown 594.0
1980 Male, age 76, both hemispheres 573.0
2162 Male, age 80, both hemispheres 563.4
2317 Female, age 72, unknown 551.5
2788 Male, age 74, unknown 537.1
Medial olivary nucleus
nTPM: 595.0
1943 Male, age 61, both hemispheres 636.3
2138 Female, age 91, both hemispheres 596.4
1962 Male, age 76, both hemispheres 587.7
2851 Male, age 80, both hemispheres 559.5
Medial parabrachial nucleus
nTPM: 564.9
2170 Female, age 91, both hemispheres 617.8
2854 Male, age 80, both hemispheres 577.2
2156 Male, age 61, both hemispheres 546.3
2786 Male, age 76, both hemispheres 543.6
2463 Female, age 85, right hemisphere 539.7
Medial periolivary nuclei
nTPM: 587.4
2171 Female, age 85, both hemispheres 630.4
2063 Male, age 76, both hemispheres 611.5
2791 Male, age 74, right hemisphere 576.6
2081 Male, age 80, both hemispheres 574.0
2458 Female, age 91, both hemispheres 544.3
Motor facial nucleus
nTPM: 579.0
2365 Male, age 74, right hemisphere 620.1
2062 Male, age 76, both hemispheres 617.6
2697 Female, age 85, both hemispheres 596.7
2126 Male, age 61, both hemispheres 572.8
2327 Male, age 80, both hemispheres 541.5
2795 Female, age 91, both hemispheres 525.5
Motor trigeminal nucleus
nTPM: 559.2
2335 Male, age 61, both hemispheres 588.8
2560 Male, age 74, both hemispheres 575.2
2079 Male, age 80, both hemispheres 573.5
2309 Male, age 76, both hemispheres 531.7
2321 Female, age 91, both hemispheres 526.9
Nuclei of the trapezoid body
nTPM: 597.4
2159 Male, age 61, both hemispheres 649.2
1983 Male, age 76, both hemispheres 614.0
2735 Female, age 85, both hemispheres 612.1
2166 Male, age 80, both hemispheres 582.6
2368 Female, age 91, both hemispheres 529.2
Paramedian reticular nucleus
nTPM: 571.4
2050 Female, age 85, both hemispheres 606.1
2057 Male, age 80, both hemispheres 585.8
2313 Male, age 61, both hemispheres 568.0
2052 Male, age 76, both hemispheres 525.8
Pontine nuclei
nTPM: 622.1
2787 Female, age 85, both hemispheres 679.3
1863 Male, age 55, unknown 679.1
2727 Male, age 61, right hemisphere 650.5
2109 Female, age 72, unknown 616.1
2454 Male, age 74, left hemisphere 606.3
1968 Male, age 76, left hemisphere 595.0
2115 Male, age 80, left hemisphere 585.6
2319 Female, age 91, both hemispheres 564.8
Pontine raphe nucleus
nTPM: 562.6
2122 Female, age 85, midline 588.1
2853 Male, age 76, midline 537.0
Posteroventral cochlear nucleus
nTPM: 567.0
2135 Female, age 91, both hemispheres 584.1
2070 Male, age 76, both hemispheres 578.1
2752 Female, age 85, both hemispheres 568.6
2341 Male, age 80, both hemispheres 568.3
2371 Male, age 61, both hemispheres 535.9
Principal sensory trigeminal nucleus
nTPM: 593.6
2158 Male, age 61, both hemispheres 671.9
2367 Female, age 91, left hemisphere 574.2
2008 Male, age 80, left hemisphere 571.7
2324 Male, age 76, both hemispheres 556.6
Reticular pontine nucleus, caudal
nTPM: 570.3
2092 Male, age 76, both hemispheres 600.8
2559 Male, age 74, both hemispheres 576.8
2332 Male, age 80, right hemisphere 553.9
2457 Female, age 91, both hemispheres 549.6
Reticular pontine nucleus, oral
nTPM: 567.8
2361 Male, age 74, both hemispheres 587.2
2012 Female, age 85, both hemispheres 568.6
1939 Male, age 80, both hemispheres 561.9
2366 Female, age 91, both hemispheres 561.7
2167 Male, age 76, both hemispheres 559.7
Reticulotegmental nucleus
nTPM: 558.2
2322 Female, age 91, both hemispheres 565.6
2452 Male, age 74, both hemispheres 563.7
2333 Male, age 80, both hemispheres 552.0
2325 Male, age 76, both hemispheres 551.3
Spinal trigeminal nucleus, oral
nTPM: 560.7
2164 Male, age 80, both hemispheres 574.3
2737 Female, age 85, both hemispheres 558.5
1978 Male, age 76, both hemispheres 549.3
Subcoeruleus area
nTPM: 554.4
1958 Male, age 80, both hemispheres 574.8
2323 Female, age 91, left hemisphere 565.0
2089 Male, age 76, left hemisphere 552.5
2369 Female, age 85, left hemisphere 552.4
2451 Male, age 74, both hemispheres 527.2
Superior olive
nTPM: 586.5
2364 Male, age 74, right hemisphere 626.8
1875 Female, age 85, both hemispheres 599.9
2020 Male, age 76, both hemispheres 578.1
2561 Female, age 91, both hemispheres 568.3
2329 Male, age 80, right hemisphere 559.3
Superior vestibular nucleus
nTPM: 565.3
2383 Male, age 74, both hemispheres 572.7
2015 Male, age 80, both hemispheres 565.7
2061 Male, age 76, both hemispheres 557.4
Ventral periolivary nuclei
nTPM: 572.1
2130 Female, age 85, both hemispheres 597.9
2165 Male, age 80, both hemispheres 589.0
2023 Male, age 76, both hemispheres 574.3
2794 Female, age 91, left hemisphere 527.1
Ventrolateral tegmental area, A5 NE cell group
nTPM: 569.2
2449 Male, age 74, both hemispheres 578.3
1959 Male, age 76, both hemispheres 575.7
2359 Male, age 61, both hemispheres 575.5
2161 Male, age 80, both hemispheres 573.0
2840 Female, age 85, both hemispheres 572.8
2456 Female, age 91, both hemispheres 540.1

PONS - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

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Max Scaled Tags Per Million 1164.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Locus coeruleus
Scaled Tags Per Million: 724.3
FF:10165-103B3 76 years, female 805.7
FF:10182-103D2 60 years, female 643.0
Pons
Scaled Tags Per Million: 1164.2
FF:10033-101E6 18-54 years, mixed 1164.2

PONS - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

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Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Pons
Expression energy: 0.1
70719651 Antisense, RP_050426_02_D11, Mouse strain C57BL/6J (56 days, male) 0.1

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