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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:608.3 nTPM
HPA:608.3 nTPM
GTEx:817.4 nTPM
FANTOM5:661.3 Scaled Tags Per Million

SPINAL CORD - HPA Brain RNA-seq
Max nTPM 608.3
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 574.6
1981 Female, age 72, midline 618.8
2194 Female, age 79, both hemispheres 587.5
2565 Male, age 75, midline 583.9
2816 Male, age 47, midline 559.9
2048 Male, age 55, midline 523.2
Cervical spinal cord, dorsal horn
nTPM: 608.3
2296 Male, age 66, both hemispheres 681.6
2173 Female, age 72, unknown 648.7
2069 Male, age 47, both hemispheres 609.6
1877 Male, age 55, unknown 577.4
2297 Male, age 75, both hemispheres 576.2
2721 Male, age 90, both hemispheres 556.1
Cervical spinal cord, ventral horn
nTPM: 598.0
2098 Female, age 72, unknown 626.2
2480 Male, age 75, both hemispheres 618.3
2809 Male, age 90, both hemispheres 614.9
2295 Male, age 66, both hemispheres 595.1
2068 Male, age 55, unknown 571.8
2820 Female, age 79, both hemispheres 561.4

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 817.4
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 817.4
Samples: 159

Max nTPM: 1277.2
Min nTPM: 420.5
Std nTPM: 155.6
Median nTPM: 824.4
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 1277.2
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 1221.8
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 1153.2
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 1148.4
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 1113.8
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 1106.4
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 1100.2
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 1095.3
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 1088.7
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 1086.9
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 1078.2
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 1071.5
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 1069.5
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 1043.7
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 1035.1
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 1027.5
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 1024.5
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 1013.2
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 1011.3
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 1007.2
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 1005.1
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 1002.1
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 976.6
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 974.8
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 974.6
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 959.0
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 955.5
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 955.1
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 953.1
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 947.8
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 940.8
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 934.4
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 924.1
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 921.6
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 919.8
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 917.1
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 911.1
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 905.7
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 904.0
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 904.0
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 902.5
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 897.9
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 896.6
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 895.6
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 893.0
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 892.5
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 889.4
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 887.0
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 886.8
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 885.1
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 884.1
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 884.1
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 872.7
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 872.7
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 871.8
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 871.6
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 870.6
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 868.2
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 864.5
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 863.6
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 855.5
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 855.5
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 855.1
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 851.5
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 851.1
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 850.8
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 849.3
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 845.4
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 842.9
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 842.0
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 839.2
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 837.6
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 835.1
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 834.5
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 833.4
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 829.6
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 829.3
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 827.6
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 826.8
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 824.4
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 818.3
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 814.8
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 813.4
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 809.2
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 807.3
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 798.2
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 798.1
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 795.7
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 794.1
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 790.7
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 788.1
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 783.7
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 782.9
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 781.5
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 780.5
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 780.2
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 780.1
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 774.8
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 769.3
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 767.4
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 763.3
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 757.0
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 756.7
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 751.7
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 751.3
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 747.2
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 746.2
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 745.9
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 743.5
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 741.9
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 738.6
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 733.8
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 732.2
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 731.1
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 729.9
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 727.0
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 726.6
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 726.5
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 725.2
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 723.6
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 716.7
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 715.4
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 705.6
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 704.6
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 701.4
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 698.4
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 689.3
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 688.9
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 684.2
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 677.0
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 672.8
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 668.9
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 667.6
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 660.7
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 657.0
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 649.7
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 649.0
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 648.6
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 647.5
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 638.6
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 633.6
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 632.8
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 623.1
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 621.3
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 609.4
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 586.3
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 585.3
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 571.6
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 569.7
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 561.0
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 559.6
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 558.0
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 552.3
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 540.4
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 534.1
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 528.0
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 501.2
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 479.8
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 420.5
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 661.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 661.3
FF:10159-103A6 76 years, female 730.2
FF:10181-103D1 60 years, female 592.4

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