MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:571.5 nTPM
HPA:571.5 nTPM
GTEx:684.7 nTPM
FANTOM5:907.6 Scaled Tags Per Million
Mouse:923.2 nTPM
Allen mouse:0.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 571.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 541.1
2019 Male, age 18, unknown 571.1
2666 Male, age 74, left hemisphere 564.6
1827 Male, age 72, unknown 563.7
2411 Female, age 72, unknown 560.1
1870 Female, age 42, unknown 558.8
2828 Female, age 72, unknown 555.9
2219 Male, age 76, both hemispheres 521.5
1833 Male, age 53, unknown 514.3
1830 Male, age 51, unknown 513.5
2586 Male, age 75, left hemisphere 487.4
Dorsal raphe nucleus
nTPM: 526.1
2750 Male, age 76, both hemispheres 554.4
2298 Female, age 72, unknown 550.4
2047 Male, age 72, unknown 522.3
1828 Male, age 53, unknown 514.5
2016 Female, age 72, unknown 488.8
Inferior colliculus
nTPM: 515.8
1848 Female, age 42, unknown 524.8
2097 Female, age 72, unknown 522.9
1890 Male, age 53, unknown 510.8
2849 Male, age 72, unknown 504.8
Median raphe nucleus
nTPM: 551.1
2220 Male, age 76, midline 551.1
Pedunculopontine tegmental nucleus
nTPM: 571.5
2338 Male, age 61, both hemispheres 614.9
2334 Male, age 80, both hemispheres 570.8
1921 Female, age 85, both hemispheres 528.7
Periaquaductal grey, anterior
nTPM: 544.4
1795 Male, age 51, unknown 557.9
1947 Male, age 18, unknown 551.5
2502 Female, age 75, unknown 523.8
Periaquaductal grey, dorsal
nTPM: 505.2
1831 Male, age 72, unknown 514.8
2850 Male, age 76, both hemispheres 514.2
1840 Male, age 53, unknown 506.9
2464 Female, age 72, unknown 484.8
Periaquaductal grey, lateral
nTPM: 517.5
2272 Male, age 74, both hemispheres 532.6
2053 Male, age 18, unknown 511.0
2140 Male, age 76, both hemispheres 508.8
Pretectal area
nTPM: 568.0
1817 Female, age 42, unknown 631.5
1944 Female, age 72, unknown 618.5
2007 Male, age 72, unknown 609.0
1816 Male, age 51, unknown 601.4
1815 Male, age 53, unknown 586.0
2667 Female, age 75, unknown 568.6
2407 Male, age 75, both hemispheres 564.7
2273 Male, age 74, both hemispheres 528.3
2224 Female, age 72, unknown 518.1
2316 Male, age 76, right hemisphere 512.3
2825 Male, age 18, unknown 509.2
Red nucleus
nTPM: 551.1
2725 Female, age 75, unknown 588.6
2785 Male, age 18, unknown 581.6
1865 Male, age 51, unknown 568.3
1821 Female, age 72, unknown 552.7
1904 Male, age 53, unknown 549.3
2503 Female, age 72, unknown 548.8
2227 Male, age 72, unknown 547.7
1954 Female, age 42, unknown 546.9
2769 Male, age 72, unknown 546.7
2584 Male, age 75, left hemisphere 531.4
2823 Male, age 76, right hemisphere 529.3
2588 Male, age 74, left hemisphere 522.3
Substantia nigra
nTPM: 549.0
1889 Female, age 72, unknown 600.0
1941 Male, age 53, unknown 591.3
1916 Female, age 42, unknown 584.9
1851 Male, age 51, unknown 564.8
2665 Male, age 74, both hemispheres 542.9
2583 Male, age 75, right hemisphere 534.7
2699 Male, age 18, unknown 526.8
2590 Female, age 75, unknown 525.6
2409 Female, age 72, unknown 509.7
2241 Male, age 72, unknown 509.3
Superior colliculus
nTPM: 545.3
2087 Female, age 72, unknown 590.3
1796 Male, age 53, unknown 564.5
2261 Male, age 18, unknown 563.2
1913 Female, age 42, unknown 555.1
2668 Female, age 75, unknown 548.5
2587 Male, age 74, left hemisphere 548.4
1895 Male, age 76, right hemisphere 537.9
1995 Male, age 72, unknown 532.7
1839 Male, age 51, unknown 517.7
2664 Male, age 75, both hemispheres 494.4
Ventral tegmental area
nTPM: 551.5
2218 Male, age 76, both hemispheres 575.7
2410 Female, age 72, unknown 571.6
2223 Female, age 72, unknown 559.3
1915 Female, age 42, unknown 559.2
1942 Male, age 51, unknown 527.4
2021 Male, age 53, unknown 515.6

MIDBRAIN - GTEx RNA-seqi
Average nTPM 684.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 684.7
Samples: 139

Max nTPM: 1112.3
Min nTPM: 443.7
Std nTPM: 126.1
Median nTPM: 679.3
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 1112.3
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 1101.0
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 1051.7
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 966.6
GTEX-1F48J-0011-R2a-SM-CL535 50-59 years, female 930.8
GTEX-14C5O-0011-R2a-SM-5ZZV2 60-69 years, male 929.3
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 923.8
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 901.8
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 885.5
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 881.3
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 878.7
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 907.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 907.6
FF:10158-103A5 76 years, female 907.6

MIDBRAIN - Mouse RNA-seqi
Average nTPM 923.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 923.2
Samples: 4

Max nTPM: 950.5
Min nTPM: 892.3
Sample A Male 908.3
Sample B Male 892.3
Sample C Female 950.5
Sample D Female 941.8

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.1
70719651 Antisense, RP_050426_02_D11, Mouse strain C57BL/6J (56 days, male) 0.1

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The Human Protein Atlas

The Human Protein Atlas project is funded
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