MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:50.5 nTPM
HPA:50.5 nTPM
GTEx:40.7 nTPM
FANTOM5:48.4 Scaled Tags Per Million
Pig:39.8 nTPM
Mouse:53.2 nTPM
Allen mouse:2.7 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 50.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 50.5
2586 Male, age 75, left hemisphere 62.3
2666 Male, age 74, left hemisphere 58.9
2019 Male, age 18, unknown 51.8
2828 Female, age 72, unknown 51.0
1827 Male, age 72, unknown 50.4
2219 Male, age 76, both hemispheres 49.7
2411 Female, age 72, unknown 46.2
1870 Female, age 42, unknown 45.5
1833 Male, age 53, unknown 45.4
1830 Male, age 51, unknown 43.9
Dorsal raphe nucleus
nTPM: 45.0
1828 Male, age 53, unknown 47.8
2047 Male, age 72, unknown 47.8
2016 Female, age 72, unknown 43.6
2298 Female, age 72, unknown 43.5
2750 Male, age 76, both hemispheres 42.4
Inferior colliculus
nTPM: 43.0
1890 Male, age 53, unknown 43.7
2849 Male, age 72, unknown 43.1
2097 Female, age 72, unknown 42.6
1848 Female, age 42, unknown 42.4
Median raphe nucleus
nTPM: 42.4
2220 Male, age 76, midline 42.4
Pedunculopontine tegmental nucleus
nTPM: 42.7
2334 Male, age 80, both hemispheres 44.0
1921 Female, age 85, both hemispheres 43.3
2338 Male, age 61, both hemispheres 40.9
Periaquaductal grey, anterior
nTPM: 48.3
1795 Male, age 51, unknown 51.8
1947 Male, age 18, unknown 47.5
2502 Female, age 75, unknown 45.6
Periaquaductal grey, dorsal
nTPM: 40.8
1831 Male, age 72, unknown 42.5
2464 Female, age 72, unknown 42.5
1840 Male, age 53, unknown 40.9
2850 Male, age 76, both hemispheres 37.2
Periaquaductal grey, lateral
nTPM: 40.5
2053 Male, age 18, unknown 42.6
2272 Male, age 74, both hemispheres 41.9
2140 Male, age 76, both hemispheres 36.9
Pretectal area
nTPM: 48.0
2007 Male, age 72, unknown 57.0
1816 Male, age 51, unknown 53.7
1817 Female, age 42, unknown 53.6
1944 Female, age 72, unknown 52.7
2667 Female, age 75, unknown 50.4
1815 Male, age 53, unknown 49.7
2407 Male, age 75, both hemispheres 45.8
2825 Male, age 18, unknown 45.5
2224 Female, age 72, unknown 40.7
2273 Male, age 74, both hemispheres 40.6
2316 Male, age 76, right hemisphere 38.0
Red nucleus
nTPM: 48.6
2584 Male, age 75, left hemisphere 56.1
2588 Male, age 74, left hemisphere 53.9
2785 Male, age 18, unknown 52.6
1954 Female, age 42, unknown 49.0
1821 Female, age 72, unknown 48.8
2769 Male, age 72, unknown 48.6
2227 Male, age 72, unknown 47.6
1865 Male, age 51, unknown 46.1
2503 Female, age 72, unknown 46.1
2725 Female, age 75, unknown 45.7
1904 Male, age 53, unknown 45.5
2823 Male, age 76, right hemisphere 43.3
Substantia nigra
nTPM: 46.5
2665 Male, age 74, both hemispheres 52.2
2583 Male, age 75, right hemisphere 51.7
1941 Male, age 53, unknown 51.1
1916 Female, age 42, unknown 49.3
1851 Male, age 51, unknown 47.8
1889 Female, age 72, unknown 47.8
2590 Female, age 75, unknown 43.8
2409 Female, age 72, unknown 42.2
2699 Male, age 18, unknown 41.4
2241 Male, age 72, unknown 37.8
Superior colliculus
nTPM: 46.9
2664 Male, age 75, both hemispheres 56.1
2668 Female, age 75, unknown 52.1
2087 Female, age 72, unknown 48.1
2261 Male, age 18, unknown 46.5
1796 Male, age 53, unknown 46.0
1913 Female, age 42, unknown 45.3
1839 Male, age 51, unknown 45.1
2587 Male, age 74, left hemisphere 45.0
1995 Male, age 72, unknown 43.7
1895 Male, age 76, right hemisphere 41.5
Ventral tegmental area
nTPM: 43.9
2223 Female, age 72, unknown 46.0
2410 Female, age 72, unknown 45.8
1915 Female, age 42, unknown 44.1
1942 Male, age 51, unknown 43.4
2218 Male, age 76, both hemispheres 43.0
2021 Male, age 53, unknown 41.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 40.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 40.7
Samples: 139

Max nTPM: 70.5
Min nTPM: 15.1
Std nTPM: 9.2
Median nTPM: 40.8
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 70.5
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 66.5
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 64.3
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 62.5
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 62.4
GTEX-RU72-0011-R2A-SM-2TF6O 50-59 years, female 61.6
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 58.4
GTEX-14BIN-0011-R2a-SM-5S2RJ 50-59 years, female 58.3
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 57.7
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 57.1
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 56.5
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 48.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 48.4
FF:10158-103A5 76 years, female 48.4

MIDBRAIN - Pig RNA-seqi
Average nTPM 39.8
Pig sample Sample description nTPM
Midbrain
nTPM: 34.7
Samples: 4

Max nTPM: 41.1
Min nTPM: 28.3
Sample A Female 35.8
Sample B Female 28.3
Sample C Male 41.1
Sample D Male 33.6
Periaqueductal gray
nTPM: 28.7
Samples: 3

Max nTPM: 32.7
Min nTPM: 25.7
Sample B Female 27.8
Sample C Male 32.7
Sample D Male 25.7
Substantia nigra
nTPM: 32.6
Samples: 4

Max nTPM: 38.6
Min nTPM: 26.6
Sample A Female 37.6
Sample B Female 26.6
Sample C Male 38.6
Sample D Male 27.4
Superior colliculi
nTPM: 39.8
Samples: 4

Max nTPM: 46.9
Min nTPM: 29.4
Sample A Female 45.1
Sample B Female 29.4
Sample C Male 46.9
Sample D Male 37.6

MIDBRAIN - Mouse RNA-seqi
Average nTPM 53.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 53.3
Samples: 4

Max nTPM: 61.5
Min nTPM: 49.0
Sample A Male 61.5
Sample B Male 49.0
Sample C Female 49.4
Sample D Female 53.1

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 2.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.7
75651149 Antisense, RP_060518_01_A03, Mouse strain C57BL/6J (56 days, male) 2.7
68797631 Antisense, RP_050210_02_G10, Mouse strain C57BL/6J (56 days, male) 2.7

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.