We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
VEGFB
SECTIONS
  • TISSUE
  • BRAIN
  • SINGLE CELL TYPE
  • TISSUE CELL TYPE
  • PATHOLOGY
  • DISEASE
  • IMMUNE CELL
  • BLOOD PROTEIN
  • SUBCELLULAR
  • CELL LINE
  • STRUCTURE
  • METABOLIC
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ANTIBODY SUBMISSION
  • ANTIBODY AVAILABILITY
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
  • SARS-COV-2
HELP
  • ANTIBODY VALIDATION
  • ASSAYS & ANNOTATION
  • DISCLAIMER
  • HELP & FAQ
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Class
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Patient ID
Tissue
Category
Cluster
Reliability
Brain region
Category
Brain region
Category
Brain region
Category
Reliability
Cell type
Category
Cluster
Tissue
Cell type
Enrichment
Cancer
Prognosis
Cancer
Category
Cell type
Category
Cell lineage
Category
Cluster
Annotation
Disease
Location
Searches
Location
Cell line
Type
Phase
Reliability
Cancer type
Category
Cluster
Pathway
Category
Score
Score
Score
Validation
Validation
Validation
Validation
Antibodies
Protein structure
In atlas
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • TISSUE CELL

  • PATHOLOGY

  • DISEASE

  • IMMUNE

  • BLOOD

  • SUBCELL

  • CELL LINE

  • STRUCTURE

  • METABOLIC

  • VEGFB
BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:45.7 nTPM
HPA:45.7 nTPM
GTEx:132.4 nTPM
FANTOM5:67.1 Scaled Tags Per Million
Pig:24.9 nTPM
Mouse:68.6 nTPM
Allen mouse:0.8 Expression energy

AMYGDALA - Annotated protein expression
Pending normal tissue analysis

AMYGDALA - HPA Brain RNA-seq
Max nTPM 45.7
Sample id Sample description nTPM
Amygdala
nTPM: 42.4
2695 Female, age 67, right hemisphere 58.5
2514 Male, age 75, right hemisphere 38.7
1987 Female, age 91, left hemisphere 38.4
2517 Female, age 94, left hemisphere 38.4
2814 Male, age 76, right hemisphere 38.2
Basal amygdala
nTPM: 42.7
2609 Male, age 75, right hemisphere 61.5
2827 Female, age 67, right hemisphere 48.6
2685 Female, age 94, left hemisphere 40.0
1955 Male, age 76, both hemispheres 37.7
2243 Female, age 91, right hemisphere 35.8
2110 Male, age 80, left hemisphere 32.7
Central amygdala
nTPM: 45.3
2826 Female, age 94, left hemisphere 58.2
2515 Male, age 75, right hemisphere 49.8
2701 Female, age 91, right hemisphere 42.8
2239 Male, age 80, left hemisphere 38.9
1905 Male, age 76, both hemispheres 36.9
Corticomedial amygdala
nTPM: 36.2
2535 Female, age 67, right hemisphere 45.4
2428 Male, age 75, right hemisphere 42.8
2829 Male, age 80, left hemisphere 36.6
2242 Female, age 91, right hemisphere 31.6
2429 Female, age 94, left hemisphere 31.1
2240 Male, age 76, both hemispheres 29.9
Lateral amygdala
nTPM: 45.7
2830 Female, age 67, right hemisphere 51.5
2256 Male, age 80, left hemisphere 51.1
2516 Male, age 75, right hemisphere 48.3
2255 Female, age 91, right hemisphere 43.5
2534 Female, age 94, left hemisphere 41.3
1883 Male, age 76, both hemispheres 38.2
Stria terminalis, bed nucleus
nTPM: 30.8
2201 Male, age 74, unknown 41.7
1974 Female, age 91, both hemispheres 28.5
2486 Female, age 94, both hemispheres 22.3

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 132.4
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 132.4
Samples: 152

Max nTPM: 318.1
Min nTPM: 18.3
Std nTPM: 47.3
Median nTPM: 126.4
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 318.1
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 272.9
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 268.8
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 230.3
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 228.4
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 228.2
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 227.6
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 224.1
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 214.3
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 209.2
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 207.4
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 204.7
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 200.8
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 198.5
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 198.0
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 197.8
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 194.6
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 190.0
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 186.7
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 184.4
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 182.6
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 182.5
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 179.5
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 177.7
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 175.2
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 172.6
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 172.4
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 170.8
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 168.4
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 166.8
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 166.2
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 164.5
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 163.9
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 162.5
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 162.4
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 162.3
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 161.6
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 161.2
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 160.6
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 159.1
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 158.6
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 158.1
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 156.0
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 155.0
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 152.0
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 150.3
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 150.1
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 149.6
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 149.2
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 146.6
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 145.9
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 145.7
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 145.6
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 144.5
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 143.9
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 143.7
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 141.7
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 141.3
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 140.5
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 138.7
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 136.8
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 135.8
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 135.5
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 134.0
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 133.9
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 132.8
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 132.2
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 131.5
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 131.0
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 130.4
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 129.3
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 129.2
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 129.2
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 126.9
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 126.8
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 126.7
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 126.0
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 125.8
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 125.7
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 125.1
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 124.3
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 122.9
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 121.6
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 121.6
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 121.5
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 121.4
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 120.8
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 120.1
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 119.3
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 118.5
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 115.5
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 114.2
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 113.2
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 113.0
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 112.6
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 112.0
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 111.8
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 111.8
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 111.1
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 110.7
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 109.4
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 109.0
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 108.9
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 108.0
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 107.8
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 107.8
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 106.7
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 105.8
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 105.4
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 103.4
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 103.2
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 102.5
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 102.4
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 101.5
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 100.4
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 99.7
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 97.5
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 95.6
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 95.4
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 94.1
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 93.0
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 92.7
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 90.9
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 90.8
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 89.9
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 89.1
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 88.3
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 87.2
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 85.3
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 84.5
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 84.4
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 83.5
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 81.9
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 80.8
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 80.7
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 79.6
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 79.0
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 77.2
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 76.8
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 76.1
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 75.3
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 71.9
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 69.5
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 68.4
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 67.3
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 65.2
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 64.7
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 57.5
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 54.8
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 52.8
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 45.3
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 18.3
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 67.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 67.1
FF:10151-102I7 76 years, female 67.1

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 24.9
Pig sample Sample description nTPM
Amygdala
nTPM: 24.9
Samples: 4

Max nTPM: 28.5
Min nTPM: 20.1
Sample A Female 28.5
Sample B Female 24.7
Sample C Male 26.3
Sample D Male 20.1

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 68.6
Mouse sample Sample description nTPM
Amygdala
nTPM: 68.6
Samples: 4

Max nTPM: 86.2
Min nTPM: 62.5
Sample A Male 62.5
Sample B Male 63.0
Sample C Female 86.2
Sample D Female 62.8

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 0.8
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 0.8
75079746 Antisense, RP_060412_02_F02, Mouse strain C57BL/6J (56 days, male) 0.8
75694242 Antisense, RP_060412_02_F02, Mouse strain C57BL/6J (56 days, male) 0.5

Contact

  • NEWS ARTICLES
  • PRESS ROOM
  • contact@proteinatlas.org

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.