MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:47.4 nTPM
HPA:47.4 nTPM
GTEx:132.4 nTPM
FANTOM5:58.6 Scaled Tags Per Million
Pig:40.2 nTPM
Mouse:51.5 nTPM
Allen mouse:1.6 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 47.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 46.4
2586 Male, age 75, left hemisphere 70.8
2828 Female, age 72, unknown 58.8
2666 Male, age 74, left hemisphere 53.3
1827 Male, age 72, unknown 45.2
1833 Male, age 53, unknown 44.3
1870 Female, age 42, unknown 42.5
2411 Female, age 72, unknown 40.4
1830 Male, age 51, unknown 40.1
2219 Male, age 76, both hemispheres 36.3
2019 Male, age 18, unknown 32.1
Dorsal raphe nucleus
nTPM: 46.4
2016 Female, age 72, unknown 52.2
2047 Male, age 72, unknown 50.4
1828 Male, age 53, unknown 44.8
2750 Male, age 76, both hemispheres 43.5
2298 Female, age 72, unknown 41.2
Inferior colliculus
nTPM: 42.2
2849 Male, age 72, unknown 48.0
1890 Male, age 53, unknown 44.7
1848 Female, age 42, unknown 41.8
2097 Female, age 72, unknown 34.4
Median raphe nucleus
nTPM: 47.4
2220 Male, age 76, midline 47.4
Pedunculopontine tegmental nucleus
nTPM: 36.8
2334 Male, age 80, both hemispheres 41.0
1921 Female, age 85, both hemispheres 37.9
2338 Male, age 61, both hemispheres 31.4
Periaquaductal grey, anterior
nTPM: 45.1
1795 Male, age 51, unknown 47.9
1947 Male, age 18, unknown 46.5
2502 Female, age 75, unknown 40.9
Periaquaductal grey, dorsal
nTPM: 42.5
1840 Male, age 53, unknown 47.9
2850 Male, age 76, both hemispheres 42.3
2464 Female, age 72, unknown 41.2
1831 Male, age 72, unknown 38.6
Periaquaductal grey, lateral
nTPM: 41.3
2053 Male, age 18, unknown 47.7
2140 Male, age 76, both hemispheres 41.5
2272 Male, age 74, both hemispheres 34.8
Pretectal area
nTPM: 40.2
2825 Male, age 18, unknown 51.7
2316 Male, age 76, right hemisphere 44.8
2007 Male, age 72, unknown 41.0
2407 Male, age 75, both hemispheres 41.0
2224 Female, age 72, unknown 40.4
1815 Male, age 53, unknown 39.4
1816 Male, age 51, unknown 38.8
1817 Female, age 42, unknown 38.6
2667 Female, age 75, unknown 38.0
1944 Female, age 72, unknown 36.4
2273 Male, age 74, both hemispheres 32.5
Red nucleus
nTPM: 44.4
2584 Male, age 75, left hemisphere 52.2
2503 Female, age 72, unknown 49.5
2769 Male, age 72, unknown 49.5
2588 Male, age 74, left hemisphere 48.8
2227 Male, age 72, unknown 48.0
1954 Female, age 42, unknown 45.4
2725 Female, age 75, unknown 43.1
1821 Female, age 72, unknown 42.3
1904 Male, age 53, unknown 40.9
2823 Male, age 76, right hemisphere 40.9
1865 Male, age 51, unknown 37.8
2785 Male, age 18, unknown 34.1
Substantia nigra
nTPM: 46.3
2665 Male, age 74, both hemispheres 58.2
2699 Male, age 18, unknown 52.5
2583 Male, age 75, right hemisphere 51.2
1916 Female, age 42, unknown 50.9
2590 Female, age 75, unknown 50.8
1851 Male, age 51, unknown 48.2
1889 Female, age 72, unknown 39.9
1941 Male, age 53, unknown 39.1
2409 Female, age 72, unknown 36.6
2241 Male, age 72, unknown 35.5
Superior colliculus
nTPM: 43.4
2664 Male, age 75, both hemispheres 62.6
1796 Male, age 53, unknown 45.4
2668 Female, age 75, unknown 45.4
2587 Male, age 74, left hemisphere 43.9
2261 Male, age 18, unknown 43.8
1839 Male, age 51, unknown 43.7
1995 Male, age 72, unknown 38.5
1895 Male, age 76, right hemisphere 37.4
1913 Female, age 42, unknown 37.2
2087 Female, age 72, unknown 35.7
Ventral tegmental area
nTPM: 45.9
1915 Female, age 42, unknown 55.4
1942 Male, age 51, unknown 53.3
2021 Male, age 53, unknown 47.2
2218 Male, age 76, both hemispheres 41.4
2410 Female, age 72, unknown 41.1
2223 Female, age 72, unknown 36.8

MIDBRAIN - GTEx RNA-seqi
Average nTPM 132.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 132.4
Samples: 139

Max nTPM: 247.7
Min nTPM: 45.3
Std nTPM: 41.9
Median nTPM: 130.0
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 247.7
GTEX-11PRG-0011-R2a-SM-69LQ5 50-59 years, male 235.8
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 229.4
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 221.8
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 220.7
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 214.9
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 208.8
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 206.1
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 199.8
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 199.5
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 198.1
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 58.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 58.6
FF:10158-103A5 76 years, female 58.6

MIDBRAIN - Pig RNA-seqi
Average nTPM 40.2
Pig sample Sample description nTPM
Midbrain
nTPM: 38.1
Samples: 4

Max nTPM: 41.0
Min nTPM: 35.3
Sample A Female 39.9
Sample B Female 35.3
Sample C Male 41.0
Sample D Male 36.3
Periaqueductal gray
nTPM: 30.7
Samples: 3

Max nTPM: 34.4
Min nTPM: 26.4
Sample B Female 31.2
Sample C Male 34.4
Sample D Male 26.4
Substantia nigra
nTPM: 37.2
Samples: 4

Max nTPM: 47.5
Min nTPM: 29.3
Sample A Female 47.5
Sample B Female 31.9
Sample C Male 40.0
Sample D Male 29.3
Superior colliculi
nTPM: 40.2
Samples: 4

Max nTPM: 47.7
Min nTPM: 34.9
Sample A Female 47.7
Sample B Female 34.9
Sample C Male 39.6
Sample D Male 38.6

MIDBRAIN - Mouse RNA-seqi
Average nTPM 51.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 51.5
Samples: 4

Max nTPM: 62.1
Min nTPM: 44.9
Sample A Male 62.1
Sample B Male 51.7
Sample C Female 44.9
Sample D Female 47.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.6
75694242 Antisense, RP_060412_02_F02, Mouse strain C57BL/6J (56 days, male) 1.6
75079746 Antisense, RP_060412_02_F02, Mouse strain C57BL/6J (56 days, male) 1.3

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.