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BRAIN PONS Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
PRIMARY MOUSE DATA
ANTIBODIES
AND
VALIDATION
Brain proteome
Pons
PONS - Expression summary
Mouse brain, Intensity
Ponsi

Protein expression in mouse brain using immunofluorescence is reported as mean fluorescence intensity .

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69.287
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
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Consensus:793.8 nTPM
HPA:793.8 nTPM
FANTOM5:1139.6 Scaled Tags Per Million
Pig:430.5 nTPM
Allen mouse:15.6 Expression energy

PONS - Mouse brain profilei

Protein expression in mouse brain using immunofluorescence is reported as fluorescence intensity .

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, antibody HPA023338
Pons mean intensity 69.287
intensityi

Protein expression in mouse brain using immunofluorescence is reported as mean fluorescence intensity .

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FRONT BACK
Barrington's nucleus -
Koelliker-fuse nucleus -
Motor tregiminal nucleus 24.826
Parabrachial nucleus 63.553
Principle sensory trigeminal nucleus 29.581
Locus coeruleus 69.287
Pontine nucleus 47.027
Vestibular nucleus 31.923
Pontine reticular nucleus, oral 48.078
Lateral lemniscus 12.826
Superior paraolivary nucleus 12.643

PONS - HPA Brain RNA-seq
Max nTPM 793.8
Sample id Sample description nTPM
Anterior cochlear nucleus, ventral
nTPM: 668.7
2188 Female, age 91, both hemispheres 763.5
2090 Male, age 80, both hemispheres 740.3
2301 Female, age 85, both hemispheres 738.8
1984 Male, age 76, both hemispheres 432.3
Dorsal cochlear nucleus
nTPM: 600.6
2378 Male, age 80, both hemispheres 643.3
2187 Female, age 91, both hemispheres 619.9
2802 Male, age 74, right hemisphere 614.2
2058 Male, age 76, both hemispheres 569.2
2370 Male, age 61, both hemispheres 556.3
Dorsal tegmental nucleus
nTPM: 526.4
2083 Male, age 80, both hemispheres 707.1
2326 Male, age 74, both hemispheres 556.8
1936 Male, age 76, left hemisphere 452.5
2358 Male, age 61, both hemispheres 389.0
Dorsolateral tegmental area
nTPM: 551.0
2751 Female, age 85, both hemispheres 751.7
2654 Male, age 80, both hemispheres 659.5
2337 Male, age 61, both hemispheres 535.3
2360 Male, age 74, both hemispheres 430.4
2141 Male, age 76, both hemispheres 378.0
Kolliker-Fuse nucleus
nTPM: 573.4
2793 Female, age 91, left hemisphere 721.7
2163 Male, age 80, both hemispheres 544.5
2315 Male, age 76, right hemisphere 453.8
Lateral lemniscal nuclei
nTPM: 564.2
2320 Female, age 91, left hemisphere 673.8
2746 Female, age 85, left hemisphere 591.0
2169 Male, age 76, both hemispheres 547.9
2036 Male, age 80, both hemispheres 529.8
2453 Male, age 74, right hemisphere 478.6
Lateral parabrachial nucleus
nTPM: 664.9
2792 Male, age 76, both hemispheres 880.1
2013 Male, age 80, both hemispheres 676.9
2790 Male, age 61, both hemispheres 600.5
2139 Female, age 85, right hemisphere 502.3
Lateral vestibular nucleus
nTPM: 571.2
2311 Male, age 80, both hemispheres 616.9
2184 Male, age 76, both hemispheres 525.4
Locus coeruleus
nTPM: 380.5
2162 Male, age 80, both hemispheres 446.9
2317 Female, age 72, unknown 417.5
2720 Male, age 74, both hemispheres 394.8
2123 Female, age 91, both hemispheres 363.5
2788 Male, age 74, unknown 357.1
2014 Male, age 55, unknown 355.0
1980 Male, age 76, both hemispheres 328.8
Medial olivary nucleus
nTPM: 793.8
1943 Male, age 61, both hemispheres 1041.7
1962 Male, age 76, both hemispheres 797.0
2138 Female, age 91, both hemispheres 700.8
2851 Male, age 80, both hemispheres 635.6
Medial parabrachial nucleus
nTPM: 597.6
2463 Female, age 85, right hemisphere 704.1
2170 Female, age 91, both hemispheres 660.6
2786 Male, age 76, both hemispheres 566.3
2854 Male, age 80, both hemispheres 545.9
2156 Male, age 61, both hemispheres 511.3
Medial periolivary nuclei
nTPM: 570.5
2081 Male, age 80, both hemispheres 685.7
2458 Female, age 91, both hemispheres 595.6
2791 Male, age 74, right hemisphere 594.5
2063 Male, age 76, both hemispheres 590.6
2171 Female, age 85, both hemispheres 386.3
Motor facial nucleus
nTPM: 595.7
2126 Male, age 61, both hemispheres 787.2
2697 Female, age 85, both hemispheres 638.5
2365 Male, age 74, right hemisphere 601.7
2062 Male, age 76, both hemispheres 536.9
2795 Female, age 91, both hemispheres 522.2
2327 Male, age 80, both hemispheres 487.7
Motor trigeminal nucleus
nTPM: 569.6
2321 Female, age 91, both hemispheres 611.1
2560 Male, age 74, both hemispheres 589.5
2309 Male, age 76, both hemispheres 579.7
2079 Male, age 80, both hemispheres 554.4
2335 Male, age 61, both hemispheres 513.5
Nuclei of the trapezoid body
nTPM: 535.2
2166 Male, age 80, both hemispheres 641.0
2368 Female, age 91, both hemispheres 591.0
1983 Male, age 76, both hemispheres 553.6
2159 Male, age 61, both hemispheres 513.4
2735 Female, age 85, both hemispheres 376.8
Paramedian reticular nucleus
nTPM: 567.3
2057 Male, age 80, both hemispheres 673.4
2052 Male, age 76, both hemispheres 563.8
2313 Male, age 61, both hemispheres 516.1
2050 Female, age 85, both hemispheres 515.8
Pontine nuclei
nTPM: 621.4
2454 Male, age 74, left hemisphere 791.8
2319 Female, age 91, both hemispheres 736.0
2109 Female, age 72, unknown 714.5
1968 Male, age 76, left hemisphere 647.8
2115 Male, age 80, left hemisphere 623.3
1863 Male, age 55, unknown 595.2
2727 Male, age 61, right hemisphere 459.3
2787 Female, age 85, both hemispheres 403.5
Pontine raphe nucleus
nTPM: 460.5
2853 Male, age 76, midline 470.5
2122 Female, age 85, midline 450.5
Posteroventral cochlear nucleus
nTPM: 713.0
2135 Female, age 91, both hemispheres 926.8
2341 Male, age 80, both hemispheres 775.4
2070 Male, age 76, both hemispheres 727.1
2371 Male, age 61, both hemispheres 625.7
2752 Female, age 85, both hemispheres 509.8
Principal sensory trigeminal nucleus
nTPM: 520.2
2367 Female, age 91, left hemisphere 682.4
2324 Male, age 76, both hemispheres 492.3
2008 Male, age 80, left hemisphere 484.3
2158 Male, age 61, both hemispheres 421.8
Reticular pontine nucleus, caudal
nTPM: 659.0
2559 Male, age 74, both hemispheres 730.4
2457 Female, age 91, both hemispheres 719.0
2092 Male, age 76, both hemispheres 695.3
2332 Male, age 80, right hemisphere 491.2
Reticular pontine nucleus, oral
nTPM: 655.7
2366 Female, age 91, both hemispheres 766.1
2361 Male, age 74, both hemispheres 663.3
1939 Male, age 80, both hemispheres 655.9
2167 Male, age 76, both hemispheres 616.2
2012 Female, age 85, both hemispheres 577.2
Reticulotegmental nucleus
nTPM: 515.0
2322 Female, age 91, both hemispheres 571.9
2333 Male, age 80, both hemispheres 552.5
2452 Male, age 74, both hemispheres 551.0
2325 Male, age 76, both hemispheres 384.6
Spinal trigeminal nucleus, oral
nTPM: 544.6
1978 Male, age 76, both hemispheres 606.6
2164 Male, age 80, both hemispheres 571.6
2737 Female, age 85, both hemispheres 455.5
Subcoeruleus area
nTPM: 581.5
2369 Female, age 85, left hemisphere 845.3
2089 Male, age 76, left hemisphere 595.6
1958 Male, age 80, both hemispheres 518.7
2451 Male, age 74, both hemispheres 498.3
2323 Female, age 91, left hemisphere 449.5
Superior olive
nTPM: 613.3
2020 Male, age 76, both hemispheres 766.9
2364 Male, age 74, right hemisphere 615.1
2329 Male, age 80, right hemisphere 599.1
2561 Female, age 91, both hemispheres 571.5
1875 Female, age 85, both hemispheres 513.8
Superior vestibular nucleus
nTPM: 522.7
2015 Male, age 80, both hemispheres 594.7
2061 Male, age 76, both hemispheres 530.1
2383 Male, age 74, both hemispheres 443.4
Ventral periolivary nuclei
nTPM: 539.6
2023 Male, age 76, both hemispheres 754.1
2165 Male, age 80, both hemispheres 523.7
2794 Female, age 91, left hemisphere 463.7
2130 Female, age 85, both hemispheres 416.8
Ventrolateral tegmental area, A5 NE cell group
nTPM: 593.5
2456 Female, age 91, both hemispheres 688.9
2359 Male, age 61, both hemispheres 634.9
1959 Male, age 76, both hemispheres 616.0
2161 Male, age 80, both hemispheres 573.3
2840 Female, age 85, both hemispheres 534.6
2449 Male, age 74, both hemispheres 513.4

PONS - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

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Max Scaled Tags Per Million 1139.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Locus coeruleus
Scaled Tags Per Million: 840.6
FF:10182-103D2 60 years, female 961.0
FF:10165-103B3 76 years, female 720.2
Pons
Scaled Tags Per Million: 1139.6
FF:10033-101E6 18-54 years, mixed 1139.6

PONS - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
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Average nTPM 430.5
Pig sample Sample description nTPM
Pons
nTPM: 430.5
Samples: 4

Max nTPM: 644.6
Min nTPM: 302.3
Sample A Female 344.3
Sample B Female 302.3
Sample C Male 430.7
Sample D Male 644.6

PONS - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

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Max Expression energy 15.6
Allen experiment id Experiment description Expression energy
Pons
Expression energy: 15.6
77371841 Antisense, RP_070129_01_A04, Mouse strain C57BL/6J (56 days, male) 17.5
79488913 Antisense, RP_070129_01_A04, Mouse strain C57BL/6J (56 days, male) 16.0
1175 Antisense, RP_040407_02_H04, Mouse strain C57BL/6J (56 days, male) 13.7
1176 Antisense, RP_040407_02_H04, Mouse strain C57BL/6J (56 days, male) 11.2

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