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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
PRIMARY MOUSE DATA
ANTIBODIES
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VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:644.6 nTPM
HPA:644.6 nTPM
GTEx:1156.1 nTPM
FANTOM5:905.3 Scaled Tags Per Million
Pig:767.2 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max nTPM 644.6
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 540.9
1981 Female, age 72, midline 640.2
2194 Female, age 79, both hemispheres 568.8
2816 Male, age 47, midline 565.5
2048 Male, age 55, midline 513.2
2565 Male, age 75, midline 416.7
Cervical spinal cord, dorsal horn
nTPM: 644.6
2296 Male, age 66, both hemispheres 994.9
2173 Female, age 72, unknown 882.2
2069 Male, age 47, both hemispheres 599.3
1877 Male, age 55, unknown 560.8
2297 Male, age 75, both hemispheres 454.4
2721 Male, age 90, both hemispheres 375.8
Cervical spinal cord, ventral horn
nTPM: 622.5
2068 Male, age 55, unknown 735.4
2820 Female, age 79, both hemispheres 649.8
2098 Female, age 72, unknown 597.4
2809 Male, age 90, both hemispheres 596.6
2480 Male, age 75, both hemispheres 583.6
2295 Male, age 66, both hemispheres 572.4

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 1156.1
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 1156.1
Samples: 159

Max nTPM: 2816.5
Min nTPM: 198.1
Std nTPM: 494.6
Median nTPM: 1086.4
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 2816.5
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 2579.1
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 2542.5
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 2442.0
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 2180.7
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 2142.8
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 2129.8
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 2087.6
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 2034.0
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 1918.4
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 1907.9
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 1891.0
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 1883.7
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 1849.9
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 1849.7
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 1834.8
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 1766.8
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 1738.3
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 1726.5
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 1694.5
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 1673.9
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 1659.7
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 1654.7
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 1650.5
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 1630.0
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 1625.4
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 1609.5
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 1586.0
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 1577.2
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 1567.6
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 1547.9
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 1546.0
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 1541.6
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 1535.3
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 1534.4
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 1521.2
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 1511.0
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 1508.1
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 1493.9
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 1482.4
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 1471.7
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 1467.7
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 1422.5
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 1407.3
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 1405.2
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 1397.2
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 1391.5
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 1390.7
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 1359.1
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 1348.9
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 1346.1
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 1336.6
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 1329.4
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 1327.9
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 1325.4
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 1304.3
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 1301.3
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 1300.8
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 1283.7
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 1268.7
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 1259.7
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 1253.5
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 1251.8
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 1240.3
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 1238.4
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 1235.9
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 1227.1
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 1226.8
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 1204.5
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 1198.4
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 1195.8
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 1184.2
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 1180.1
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 1177.6
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 1128.1
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 1120.6
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 1107.5
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 1106.3
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 1104.3
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 1086.4
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 1081.2
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 1077.8
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 1077.7
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 1077.3
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 1061.5
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 1046.4
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 1031.7
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 1023.4
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 1023.1
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 1023.0
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 1018.6
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 1007.5
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 997.9
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 995.2
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 982.7
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 975.6
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 970.2
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 959.3
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 944.9
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 944.8
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 935.6
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 933.6
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 933.2
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 932.4
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 928.6
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 917.3
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 910.4
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 901.5
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 900.8
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 894.0
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 885.7
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 885.4
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 884.9
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 882.5
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 860.8
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 849.1
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 842.4
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 830.9
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 816.2
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 813.6
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 803.2
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 794.1
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 791.0
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 789.7
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 786.8
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 778.2
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 764.9
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 757.0
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 756.0
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 754.8
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 733.7
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 718.2
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 703.7
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 690.4
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 680.7
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 675.0
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 668.7
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 664.6
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 645.6
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 620.8
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 605.6
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 592.1
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 554.5
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 551.0
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 534.8
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 487.7
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 476.2
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 447.6
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 435.1
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 394.1
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 388.1
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 345.9
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 345.2
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 325.6
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 303.9
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 292.7
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 261.8
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 256.8
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 198.1
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 905.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 905.3
FF:10181-103D1 60 years, female 1286.3
FF:10159-103A6 76 years, female 524.4

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 767.2
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 668.2
Samples: 4

Max nTPM: 733.2
Min nTPM: 605.0
Sample A Female 626.5
Sample B Female 707.9
Sample C Male 605.0
Sample D Male 733.2
Ventral spinal cord
nTPM: 767.2
Samples: 4

Max nTPM: 933.9
Min nTPM: 633.5
Sample A Female 742.9
Sample B Female 758.4
Sample C Male 633.5
Sample D Male 933.9

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