MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:761.8 nTPM
HPA:761.8 nTPM
GTEx:556.5 nTPM
FANTOM5:1496.7 Scaled Tags Per Million
Pig:656.6 nTPM
Mouse:338.5 nTPM
Allen mouse:14.8 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 761.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 619.6
2411 Female, age 72, unknown 806.3
1830 Male, age 51, unknown 731.2
1870 Female, age 42, unknown 720.3
1833 Male, age 53, unknown 701.3
2019 Male, age 18, unknown 687.5
2828 Female, age 72, unknown 616.3
2586 Male, age 75, left hemisphere 490.4
2666 Male, age 74, left hemisphere 489.5
1827 Male, age 72, unknown 489.2
2219 Male, age 76, both hemispheres 463.6
Dorsal raphe nucleus
nTPM: 483.3
2750 Male, age 76, both hemispheres 763.2
2016 Female, age 72, unknown 514.5
1828 Male, age 53, unknown 451.9
2298 Female, age 72, unknown 359.0
2047 Male, age 72, unknown 327.8
Inferior colliculus
nTPM: 444.2
1890 Male, age 53, unknown 460.3
1848 Female, age 42, unknown 457.3
2849 Male, age 72, unknown 433.8
2097 Female, age 72, unknown 425.5
Median raphe nucleus
nTPM: 386.0
2220 Male, age 76, midline 386.0
Pedunculopontine tegmental nucleus
nTPM: 511.5
2334 Male, age 80, both hemispheres 559.3
1921 Female, age 85, both hemispheres 493.5
2338 Male, age 61, both hemispheres 481.8
Periaquaductal grey, anterior
nTPM: 408.4
2502 Female, age 75, unknown 443.6
1947 Male, age 18, unknown 417.9
1795 Male, age 51, unknown 363.9
Periaquaductal grey, dorsal
nTPM: 363.8
2464 Female, age 72, unknown 511.5
1831 Male, age 72, unknown 376.6
1840 Male, age 53, unknown 290.3
2850 Male, age 76, both hemispheres 276.8
Periaquaductal grey, lateral
nTPM: 384.2
2272 Male, age 74, both hemispheres 431.7
2053 Male, age 18, unknown 425.1
2140 Male, age 76, both hemispheres 295.7
Pretectal area
nTPM: 447.9
2316 Male, age 76, right hemisphere 597.7
1815 Male, age 53, unknown 574.3
2407 Male, age 75, both hemispheres 565.0
1817 Female, age 42, unknown 460.0
2007 Male, age 72, unknown 452.3
2825 Male, age 18, unknown 451.6
2273 Male, age 74, both hemispheres 414.6
2667 Female, age 75, unknown 392.1
2224 Female, age 72, unknown 378.1
1944 Female, age 72, unknown 321.8
1816 Male, age 51, unknown 319.1
Red nucleus
nTPM: 761.8
1865 Male, age 51, unknown 881.7
1904 Male, age 53, unknown 880.1
1821 Female, age 72, unknown 840.0
2823 Male, age 76, right hemisphere 835.8
2769 Male, age 72, unknown 835.4
2227 Male, age 72, unknown 829.4
2785 Male, age 18, unknown 777.8
2503 Female, age 72, unknown 753.6
1954 Female, age 42, unknown 721.6
2588 Male, age 74, left hemisphere 672.1
2725 Female, age 75, unknown 560.0
2584 Male, age 75, left hemisphere 554.4
Substantia nigra
nTPM: 479.8
1851 Male, age 51, unknown 579.3
2590 Female, age 75, unknown 570.5
2583 Male, age 75, right hemisphere 566.1
2409 Female, age 72, unknown 545.1
1889 Female, age 72, unknown 497.6
2699 Male, age 18, unknown 460.4
2241 Male, age 72, unknown 421.8
1941 Male, age 53, unknown 404.6
1916 Female, age 42, unknown 391.0
2665 Male, age 74, both hemispheres 361.6
Superior colliculus
nTPM: 555.7
1995 Male, age 72, unknown 812.7
1913 Female, age 42, unknown 749.4
1895 Male, age 76, right hemisphere 642.6
2668 Female, age 75, unknown 585.7
1839 Male, age 51, unknown 554.5
2587 Male, age 74, left hemisphere 550.8
1796 Male, age 53, unknown 474.1
2664 Male, age 75, both hemispheres 419.1
2087 Female, age 72, unknown 384.8
2261 Male, age 18, unknown 383.4
Ventral tegmental area
nTPM: 530.8
2223 Female, age 72, unknown 645.8
2410 Female, age 72, unknown 645.7
1942 Male, age 51, unknown 486.8
1915 Female, age 42, unknown 483.7
2021 Male, age 53, unknown 478.8
2218 Male, age 76, both hemispheres 444.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 556.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 556.5
Samples: 139

Max nTPM: 2285.5
Min nTPM: 156.9
Std nTPM: 342.4
Median nTPM: 459.9
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 2285.5
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 2142.9
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 1731.8
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 1463.2
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 1207.0
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 1205.2
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 1200.7
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 1185.3
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 1122.7
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 1110.6
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 1108.0
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 1496.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 1496.7
FF:10158-103A5 76 years, female 1496.7

MIDBRAIN - Pig RNA-seqi
Average nTPM 656.6
Pig sample Sample description nTPM
Midbrain
nTPM: 656.6
Samples: 4

Max nTPM: 1455.6
Min nTPM: 270.2
Sample A Female 1455.6
Sample B Female 595.5
Sample C Male 270.2
Sample D Male 305.2
Periaqueductal gray
nTPM: 383.7
Samples: 3

Max nTPM: 476.6
Min nTPM: 276.0
Sample B Female 476.6
Sample C Male 276.0
Sample D Male 398.6
Substantia nigra
nTPM: 583.3
Samples: 4

Max nTPM: 949.3
Min nTPM: 341.5
Sample A Female 610.7
Sample B Female 341.5
Sample C Male 431.7
Sample D Male 949.3
Superior colliculi
nTPM: 483.2
Samples: 4

Max nTPM: 602.1
Min nTPM: 253.5
Sample A Female 602.1
Sample B Female 253.5
Sample C Male 476.9
Sample D Male 600.1

MIDBRAIN - Mouse RNA-seqi
Average nTPM 338.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 338.5
Samples: 4

Max nTPM: 362.9
Min nTPM: 297.9
Sample A Male 362.6
Sample B Male 297.9
Sample C Female 330.6
Sample D Female 362.9

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 14.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 14.8
77371841 Antisense, RP_070129_01_A04, Mouse strain C57BL/6J (56 days, male) 17.5
79488913 Antisense, RP_070129_01_A04, Mouse strain C57BL/6J (56 days, male) 14.8
1175 Antisense, RP_040407_02_H04, Mouse strain C57BL/6J (56 days, male) 12.2
1176 Antisense, RP_040407_02_H04, Mouse strain C57BL/6J (56 days, male) 10.4

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.