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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:502.9 nTPM
HPA:502.9 nTPM
GTEx:738.9 nTPM
FANTOM5:185.7 Scaled Tags Per Million
Pig:91.4 nTPM
Mouse:1453.9 nTPM
Allen mouse:7.7 Expression energy

AMYGDALA - Annotated protein expression
Pending normal tissue analysis

AMYGDALA - HPA Brain RNA-seq
Max nTPM 502.9
Sample id Sample description nTPM
Amygdala
nTPM: 502.9
2814 Male, age 76, right hemisphere 529.4
2514 Male, age 75, right hemisphere 500.2
1987 Female, age 91, left hemisphere 498.4
2517 Female, age 94, left hemisphere 495.5
2695 Female, age 67, right hemisphere 490.9
Basal amygdala
nTPM: 488.5
1955 Male, age 76, both hemispheres 499.4
2609 Male, age 75, right hemisphere 495.0
2685 Female, age 94, left hemisphere 494.5
2110 Male, age 80, left hemisphere 492.4
2243 Female, age 91, right hemisphere 483.9
2827 Female, age 67, right hemisphere 465.9
Central amygdala
nTPM: 490.6
1905 Male, age 76, both hemispheres 514.3
2826 Female, age 94, left hemisphere 497.4
2515 Male, age 75, right hemisphere 488.7
2239 Male, age 80, left hemisphere 481.4
2701 Female, age 91, right hemisphere 471.4
Corticomedial amygdala
nTPM: 490.9
2429 Female, age 94, left hemisphere 504.7
2829 Male, age 80, left hemisphere 503.7
2240 Male, age 76, both hemispheres 495.4
2428 Male, age 75, right hemisphere 490.8
2242 Female, age 91, right hemisphere 488.7
2535 Female, age 67, right hemisphere 462.0
Lateral amygdala
nTPM: 485.8
1883 Male, age 76, both hemispheres 510.0
2516 Male, age 75, right hemisphere 507.7
2534 Female, age 94, left hemisphere 491.9
2830 Female, age 67, right hemisphere 471.0
2255 Female, age 91, right hemisphere 467.6
2256 Male, age 80, left hemisphere 466.8
Stria terminalis, bed nucleus
nTPM: 501.2
1974 Female, age 91, both hemispheres 529.4
2486 Female, age 94, both hemispheres 492.8
2201 Male, age 74, unknown 481.4

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 738.9
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 738.9
Samples: 152

Max nTPM: 4026.0
Min nTPM: 258.8
Std nTPM: 417.9
Median nTPM: 648.9
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 4026.0
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 2431.2
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 2384.1
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 1914.8
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 1716.9
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 1349.1
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 1330.2
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 1250.0
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 1235.1
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 1201.9
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 1125.4
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 1120.5
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 1115.3
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 1112.6
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 1095.8
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 1079.4
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 1079.3
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 1059.5
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 1041.4
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 1037.9
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 1028.3
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 976.1
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 949.8
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 937.7
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 926.9
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 924.0
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 915.3
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 904.8
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 892.8
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 884.0
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 876.3
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 873.1
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 871.5
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 856.2
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 854.6
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 842.1
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 836.0
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 827.7
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 818.4
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 813.0
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 812.5
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 812.3
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 811.9
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 794.2
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 792.2
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 779.7
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 777.1
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 764.7
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 762.1
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 748.0
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 742.4
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 742.1
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 733.6
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 732.8
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 725.6
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 720.8
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 717.2
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 715.7
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 708.9
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 706.9
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 697.9
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 693.6
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 691.6
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 689.4
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 685.1
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 678.1
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 678.1
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 675.3
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 673.3
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 672.2
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 662.6
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 661.3
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 659.6
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 654.9
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 650.3
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 649.1
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 648.7
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 647.2
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 642.3
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 635.2
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 633.6
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 623.7
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 623.3
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 621.0
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 619.2
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 618.9
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 618.2
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 609.6
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 605.4
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 604.5
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 604.4
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 600.2
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 594.1
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 587.9
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 585.3
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 581.6
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 578.7
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 577.6
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 573.8
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 570.7
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 569.7
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 569.5
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 566.6
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 565.5
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 564.2
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 558.4
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 552.7
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 550.2
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 548.8
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 547.0
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 544.8
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 544.2
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 537.7
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 527.8
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 526.0
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 525.5
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 522.7
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 515.6
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 506.6
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 500.1
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 485.9
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 479.6
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 477.7
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 477.1
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 475.5
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 474.3
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 469.2
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 468.4
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 467.3
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 465.8
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 465.4
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 455.5
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 451.5
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 448.2
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 447.5
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 446.4
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 437.3
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 432.7
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 431.6
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 426.2
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 413.6
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 406.9
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 389.1
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 388.7
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 382.3
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 379.1
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 374.7
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 361.0
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 347.5
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 326.3
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 262.7
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 258.8
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 185.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 185.7
FF:10151-102I7 76 years, female 185.7

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 91.4
Pig sample Sample description nTPM
Amygdala
nTPM: 91.4
Samples: 4

Max nTPM: 118.0
Min nTPM: 68.7
Sample A Female 118.0
Sample B Female 103.1
Sample C Male 75.7
Sample D Male 68.7

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 1453.9
Mouse sample Sample description nTPM
Amygdala
nTPM: 1453.9
Samples: 4

Max nTPM: 1496.8
Min nTPM: 1375.0
Sample A Male 1375.0
Sample B Male 1496.8
Sample C Female 1475.8
Sample D Female 1467.8

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 7.7
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 7.7
68203444 Antisense, RP_041018_01_C03, Mouse strain C57BL/6J (56 days, male) 7.7
67862431 Antisense, RP_041018_01_C03, Mouse strain C57BL/6J (56 days, male) 6.8

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