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BRAIN HYPOTHALAMUS Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
Brain proteome
Hypothalamus
HYPOTHALAMUS - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:539.0 nTPM
HPA:539.0 nTPM
GTEx:491.7 nTPM
Pig:102.5 nTPM
Mouse:1117.8 nTPM
Allen mouse:5.3 Expression energy

HYPOTHALAMUS - Annotated protein expression
Pending normal tissue analysis

HYPOTHALAMUS - HPA Brain RNA-seq
Max nTPM 539.0
Sample id Sample description nTPM
Arcuate nucleus
nTPM: 520.4
2226 Male, age 75, left hemisphere 540.2
1961 Female, age 42, unknown 500.6
Dorsomedial nucleus
nTPM: 494.4
1989 Male, age 62, unknown 501.6
2041 Female, age 72, unknown 496.4
2017 Female, age 42, unknown 485.4
Lateral hypothalamic area
nTPM: 527.7
2228 Male, age 66, unknown 558.7
1791 Male, age 80, right hemisphere 537.0
2271 Male, age 75, both hemispheres 515.3
2412 Male, age 62, unknown 500.0
Mamillary body
nTPM: 539.0
1923 Female, age 72, unknown 617.9
1948 Female, age 72, unknown 533.2
2413 Male, age 66, unknown 523.5
1834 Female, age 42, unknown 512.4
1945 Male, age 80, right hemisphere 508.2
Paraventricular nucleus
nTPM: 493.7
2700 Male, age 62, unknown 493.7
Preoptic area
nTPM: 499.6
1907 Male, age 80, right hemisphere 516.8
1861 Female, age 42, unknown 492.7
2414 Female, age 72, unknown 489.3
Supraoptic nucleus
nTPM: 517.0
1894 Female, age 72, unknown 543.6
2043 Male, age 62, unknown 506.2
2835 Female, age 72, unknown 501.0

HYPOTHALAMUS - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 491.7
GTEx sample id Sample description nTPM
Brain - Hypothalamus
Average nTPM: 491.7
Samples: 202

Max nTPM: 1624.4
Min nTPM: 171.1
Std nTPM: 179.6
Median nTPM: 455.0
GTEX-139TS-0011-R8a-SM-5J1NP 60-69 years, male 1624.4
GTEX-144GL-0011-R8a-SM-5Q5B1 50-59 years, male 1352.9
GTEX-14LLW-0011-R8a-SM-62LFG 70-79 years, female 1288.8
GTEX-14753-0011-R8b-SM-5S2U1 60-69 years, male 988.9
GTEX-11DYG-0011-R8a-SM-DO93F 60-69 years, male 956.9
GTEX-13FXS-0011-R8a-SM-5J1MN 50-59 years, male 903.9
GTEX-1GN1U-0011-R8a-SM-CL537 50-59 years, female 862.6
GTEX-NL3H-0011-R8a-SM-DIPDY 60-69 years, male 840.7
GTEX-12WSA-0011-R8a-SM-5P9EX 60-69 years, male 830.5
GTEX-ZUA1-0011-R8b-SM-51MST 40-49 years, male 825.5
GTEX-13FLW-0011-R8b-SM-5J1MZ 50-59 years, male 820.3
GTEX-11ZUS-0011-R8a-SM-5BC73 30-39 years, male 814.0
GTEX-11DZ1-0011-R8b-SM-DNZZI 50-59 years, male 812.8
GTEX-14JIY-0011-R8a-SM-6AJAP 60-69 years, male 763.9
GTEX-11EMC-0011-R8b-SM-DO91Z 60-69 years, female 747.7
GTEX-1H3O1-0011-R8a-SM-CL555 60-69 years, male 745.2
GTEX-1B8SG-0011-R8b-SM-7IGNW 50-59 years, male 742.7
GTEX-1RLM8-0011-R8a-SM-EYYXR 50-59 years, male 691.4
GTEX-145MH-0011-R8a-SM-5PNUL 50-59 years, male 682.2
GTEX-1C6WA-0011-R8b-SM-7P8S7 60-69 years, male 674.8
GTEX-P44H-0011-R8A-SM-2XCEL 40-49 years, male 661.0
GTEX-Y8DK-0011-R8B-SM-EYYVQ 60-69 years, male 656.1
GTEX-1HCU6-0011-R8a-SM-CJI3R 60-69 years, female 642.1
GTEX-Z93S-0011-R8a-SM-4RGNL 50-59 years, male 641.1
GTEX-T6MN-0011-R8A-SM-32QP3 50-59 years, male 638.2
GTEX-1A8G7-0011-R8a-SM-7P8S6 60-69 years, male 635.7
GTEX-1J8Q2-0011-R8b-SM-D4P2E 60-69 years, male 630.8
GTEX-1HT8W-0011-R8b-SM-CM2SX 30-39 years, male 629.1
GTEX-1A3MX-0011-R8a-SM-7P8PI 60-69 years, male 618.0
GTEX-11EI6-0011-R8a-SM-DO93M 60-69 years, male 606.1
GTEX-1ICLZ-0011-R8b-SM-ACKX4 60-69 years, male 595.5
GTEX-1F52S-0011-R8a-SM-9OSXA 60-69 years, female 593.3
GTEX-1I1GS-0011-R8b-SM-CKZPE 60-69 years, male 592.8
GTEX-TSE9-0011-R8A-SM-3DB7R 60-69 years, female 584.4
GTEX-1GMR8-0011-R8a-SM-CKZNX 50-59 years, female 582.3
GTEX-13IVO-0011-R8a-SM-5L3DY 70-79 years, male 580.3
GTEX-RNOR-0011-R8A-SM-EZ6MN 50-59 years, female 579.9
GTEX-WWYW-0011-R8A-SM-3NB3S 50-59 years, female 577.3
GTEX-T5JC-0011-R8A-SM-32PLM 20-29 years, male 574.3
GTEX-X261-0011-R8A-SM-4E3I5 50-59 years, male 566.1
GTEX-1HFI6-0011-R8a-SM-ARZLP 40-49 years, male 565.7
GTEX-16XZZ-0011-R8b-SM-7LT8S 60-69 years, male 565.5
GTEX-131XH-0011-R8a-SM-5EGLL 50-59 years, male 564.7
GTEX-132Q8-0011-R8b-SM-5DUWX 60-69 years, male 561.6
GTEX-1B8L1-0011-R8b-SM-7P8ST 60-69 years, male 560.7
GTEX-QVJO-0011-R8A-SM-447C7 60-69 years, female 559.2
GTEX-1B8SF-0011-R8b-SM-7P8SX 60-69 years, male 555.5
GTEX-13QIC-0011-R8b-SM-5O9CV 60-69 years, female 551.3
GTEX-15CHQ-0011-R8b-SM-CNPO4 60-69 years, male 551.1
GTEX-13SLX-0011-R8b-SM-5PNWZ 50-59 years, female 548.6
GTEX-13OVH-0011-R8b-SM-5MR35 70-79 years, male 546.1
GTEX-1A8G6-0011-R8a-SM-7P8PD 60-69 years, male 541.4
GTEX-1F6I4-0011-R8a-SM-9QEIA 60-69 years, male 535.4
GTEX-1313W-0011-R8a-SM-5DUVM 50-59 years, female 534.2
GTEX-QVUS-0011-R8A-SM-3GAD7 60-69 years, female 532.4
GTEX-13CIG-0011-R8b-SM-5LZX5 50-59 years, male 531.9
GTEX-X4XY-0011-R8A-SM-46MVC 60-69 years, male 531.5
GTEX-17EVQ-0011-R8a-SM-7189T 70-79 years, male 530.8
GTEX-1HSKV-0011-R8a-SM-CL54X 60-69 years, male 527.4
GTEX-1HCVE-0011-R8a-SM-ARU7A 50-59 years, male 526.4
GTEX-1F88E-0011-R8a-SM-CJI2H 60-69 years, female 525.0
GTEX-15DCD-0011-R8b-SM-7KUEF 70-79 years, female 524.8
GTEX-WVLH-0011-R8A-SM-3MJFC 50-59 years, male 523.6
GTEX-13X6I-0011-R8a-SM-5PNZF 60-69 years, male 523.3
GTEX-13NZ8-0011-R8b-SM-5KM48 60-69 years, female 521.3
GTEX-YFC4-0011-R8a-SM-4SOK3 40-49 years, female 520.0
GTEX-1J1OQ-0011-R8a-SM-ACKVE 40-49 years, female 518.2
GTEX-1I1CD-0011-R8b-SM-CJI3X 60-69 years, female 516.3
GTEX-13OVJ-0011-R8b-SM-5L3FS 50-59 years, female 513.7
GTEX-1399T-0011-R8b-SM-5IJD8 60-69 years, male 513.6
GTEX-ZVZQ-0011-R8a-SM-51MR5 60-69 years, female 513.2
GTEX-1CB4J-0011-R8a-SM-9QEHU 60-69 years, male 512.3
GTEX-N7MT-0011-R8a-SM-2I5GU 60-69 years, female 511.9
GTEX-1F75A-0011-R8a-SM-CL539 50-59 years, male 511.5
GTEX-11DXY-0011-R8a-SM-DO11M 60-69 years, male 510.9
GTEX-13NYB-0011-R8a-SM-5KM4R 40-49 years, male 510.6
GTEX-1GF9V-0011-R8b-SM-CE6RB 60-69 years, male 509.3
GTEX-145MI-0011-R8b-SM-5PNZ9 60-69 years, female 507.7
GTEX-13PDP-0011-R8b-SM-5O9CS 60-69 years, male 506.5
GTEX-1F75W-0011-R8a-SM-9QEI4 60-69 years, male 500.0
GTEX-1GN2E-0011-R8a-SM-CE6RK 60-69 years, male 498.6
GTEX-14PJM-0011-R8b-SM-69LPD 50-59 years, female 493.4
GTEX-1IY9M-0011-R8a-SM-EYYWW 60-69 years, male 492.4
GTEX-13NYS-0011-R8a-SM-5MR5H 60-69 years, male 478.1
GTEX-WHSE-0011-R8A-SM-3P5Z1 20-29 years, male 477.2
GTEX-11WQK-0011-R8a-SM-5BC7C 50-59 years, male 476.2
GTEX-1IDJH-0011-R8b-SM-ARZLL 70-79 years, male 473.6
GTEX-13OW5-0011-R8a-SM-5L3GQ 60-69 years, male 473.1
GTEX-1192X-0011-R8b-SM-DO11U 50-59 years, male 471.3
GTEX-X585-0011-R8A-SM-46MUX 50-59 years, male 470.6
GTEX-11WQC-0011-R8b-SM-57WCH 60-69 years, male 467.9
GTEX-1I1GQ-0011-R8a-SM-C1YRS 50-59 years, male 467.5
GTEX-1GN73-0011-R8b-SM-CKZNY 60-69 years, male 467.3
GTEX-1CB4H-0011-R8b-SM-CJI26 60-69 years, female 465.5
GTEX-18465-0011-R8b-SM-7LG6O 50-59 years, male 464.9
GTEX-17HII-0011-R8a-SM-79OK6 50-59 years, male 463.5
GTEX-1IKK5-0011-R8b-SM-CJI45 60-69 years, male 461.7
GTEX-1AX9I-0011-R8a-SM-7P8PJ 60-69 years, male 458.8
GTEX-145LU-0011-R8b-SM-5PNZG 50-59 years, male 456.3
GTEX-ZAB4-0011-R8b-SM-4SOKF 40-49 years, male 456.3
GTEX-1GN1V-0011-R8a-SM-CKZNV 60-69 years, male 455.8
GTEX-1I1HK-0011-R8b-SM-E8VN9 60-69 years, male 454.2
GTEX-1GZ4I-0011-R8b-SM-9WG76 50-59 years, male 453.7
GTEX-11OF3-0011-R8b-SM-57WCS 60-69 years, male 451.0
GTEX-13NZA-0011-R8b-SM-5KM2Q 60-69 years, male 449.7
GTEX-16NPV-0011-R8a-SM-7EPH8 50-59 years, female 448.4
GTEX-1H1ZS-0011-R8b-SM-A9SKA 70-79 years, male 448.1
GTEX-13RTJ-0011-R8b-SM-5O9DL 60-69 years, male 446.4
GTEX-1HGF4-0011-R8b-SM-CKZP9 60-69 years, male 445.9
GTEX-13OVL-0011-R8a-SM-5L3HH 50-59 years, male 445.7
GTEX-1GZ2Q-0011-R8a-SM-CE6RO 40-49 years, male 445.6
GTEX-13O3O-0011-R8b-SM-5LUAL 60-69 years, female 444.2
GTEX-N7MS-0011-R8a-SM-2YUMK 60-69 years, male 442.0
GTEX-QMR6-0011-R8A-SM-32PKJ 50-59 years, male 441.9
GTEX-15ER7-0011-R8a-SM-7KUL2 20-29 years, female 441.8
GTEX-1C64N-0011-R8b-SM-7MGXE 50-59 years, male 440.6
GTEX-131XW-0011-R8a-SM-5DUWY 50-59 years, female 438.8
GTEX-11GSP-0011-R8b-SM-5NQ79 60-69 years, female 436.6
GTEX-14PJO-0011-R8a-SM-6AJAL 60-69 years, male 436.2
GTEX-1H1DG-0011-R8a-SM-CL54Z 70-79 years, male 436.2
GTEX-11TTK-0011-R8b-SM-DO111 60-69 years, female 434.7
GTEX-14LZ3-0011-R8b-SM-COH3M 60-69 years, female 429.9
GTEX-OXRN-0011-R8A-SM-E9TI1 50-59 years, male 423.9
GTEX-183WM-0011-R8a-SM-7189W 70-79 years, female 422.6
GTEX-1F6IF-0011-R8a-SM-9OSX5 60-69 years, male 421.4
GTEX-X4XX-0011-R8B-SM-46MWM 60-69 years, male 420.2
GTEX-16YQH-0011-R8a-SM-7DUFB 30-39 years, male 419.9
GTEX-1BAJH-0011-R8a-SM-7MXUB 70-79 years, male 418.8
GTEX-11ZTS-0011-R8a-SM-57WDI 60-69 years, female 418.3
GTEX-YJ89-0011-R8b-SM-4SOK8 60-69 years, male 416.5
GTEX-Q2AG-0011-R8A-SM-2HMK5 40-49 years, female 414.5
GTEX-1H3NZ-0011-R8a-SM-CKZP6 60-69 years, male 411.6
GTEX-WZTO-0011-R8A-SM-4E3II 40-49 years, male 410.7
GTEX-1EMGI-0011-R8b-SM-9QEID 60-69 years, male 409.7
GTEX-13CF2-0011-R8b-SM-5IJCX 60-69 years, male 409.0
GTEX-1GF9W-0011-R8b-SM-9QEIR 60-69 years, male 407.0
GTEX-17HG3-0011-R8a-SM-79OK7 30-39 years, female 406.9
GTEX-13JVG-0011-R8a-SM-5KM3E 60-69 years, male 401.8
GTEX-14ASI-0011-R8b-SM-5S2UB 60-69 years, male 399.5
GTEX-13FLV-0011-R8a-SM-5LZZE 50-59 years, male 399.3
GTEX-13X6K-0011-R8b-SM-5PNZ4 60-69 years, female 398.9
GTEX-13O3Q-0011-R8b-SM-5KM2J 50-59 years, male 395.7
GTEX-13N1W-0011-R8a-SM-5MR56 70-79 years, male 395.4
GTEX-1E1VI-0011-R8b-SM-ARU8E 50-59 years, male 394.8
GTEX-14C5O-0011-R8a-SM-5YYAG 60-69 years, male 394.3
GTEX-11H98-0011-R8a-SM-5NQ8V 50-59 years, male 393.8
GTEX-1CB4G-0011-R8b-SM-9WG7H 60-69 years, male 393.7
GTEX-RU72-0011-R8A-SM-2TF61 50-59 years, female 391.7
GTEX-13OW8-0011-R8a-SM-5L3G5 60-69 years, male 389.1
GTEX-13SLW-0011-R8b-SM-5SI64 70-79 years, male 388.9
GTEX-ZDXO-0011-R8a-SM-4WWD7 60-69 years, male 388.6
GTEX-ZF28-0011-R8a-SM-4WWFW 60-69 years, male 388.6
GTEX-13X6J-0011-R8b-SM-5PNUA 50-59 years, male 385.7
GTEX-1E2YA-0011-R8a-SM-CKZNG 50-59 years, male 383.3
GTEX-12ZZX-0011-R8a-SM-5DUW8 40-49 years, female 379.3
GTEX-1477Z-0011-R8b-SM-5S2RG 60-69 years, male 378.8
GTEX-1GTWX-0011-R8a-SM-CE6RM 60-69 years, male 376.4
GTEX-OHPN-0011-R8A-SM-33HBT 60-69 years, female 375.5
GTEX-147F4-0011-R8b-SM-5S2UN 50-59 years, male 372.8
GTEX-1HBPH-0011-R8b-SM-CL556 40-49 years, female 370.9
GTEX-11ONC-0011-R8b-SM-5NQ87 60-69 years, male 370.6
GTEX-13OW7-0011-R8b-SM-5L3HR 50-59 years, male 370.4
GTEX-13112-0011-R8b-SM-664OV 50-59 years, male 369.0
GTEX-NL4W-0011-R8a-SM-2I3G4 50-59 years, male 368.8
GTEX-12WSM-0011-R8a-SM-5DUWJ 60-69 years, male 367.2
GTEX-1F48J-0011-R8a-SM-9OSWW 50-59 years, female 366.4
GTEX-PWO3-0011-R8A-SM-2I5GD 60-69 years, female 365.1
GTEX-ZVT3-0011-R8b-SM-57WDJ 60-69 years, female 364.5
GTEX-1B933-0011-R8a-SM-9QEGX 50-59 years, female 363.4
GTEX-14PN4-0011-R8a-SM-6EU1H 50-59 years, male 362.9
GTEX-17F97-0011-R8a-SM-7DUET 50-59 years, male 357.9
GTEX-1C6VR-0011-R8b-SM-7MXUF 60-69 years, male 357.6
GTEX-1H1CY-0011-R8b-SM-CJI31 60-69 years, female 356.7
GTEX-1GZHY-0011-R8b-SM-9OSWK 50-59 years, female 356.1
GTEX-1IKOH-0011-R8a-SM-A9SKG 60-69 years, female 353.8
GTEX-ZXG5-0011-R8a-SM-57WD1 60-69 years, male 351.6
GTEX-1B996-0011-R8b-SM-79OOS 60-69 years, male 348.5
GTEX-NPJ7-0011-R8a-SM-2I3G2 60-69 years, female 344.9
GTEX-13QJC-0011-R8b-SM-5S2U6 60-69 years, female 344.2
GTEX-16Z82-0011-R8a-SM-7DUEX 60-69 years, male 341.3
GTEX-14PQA-0011-R8b-SM-6AJAB 50-59 years, female 336.0
GTEX-16GPK-0011-R8a-SM-79OMQ 60-69 years, male 332.6
GTEX-14BIL-0011-R8b-SM-69LQK 50-59 years, male 332.3
GTEX-NPJ8-0011-R8a-SM-2HMLG 40-49 years, male 327.9
GTEX-S7SE-0011-R8A-SM-2XCDG 50-59 years, male 327.8
GTEX-1445S-0011-R8a-SM-5PNWX 60-69 years, male 322.2
GTEX-15G19-0011-R8b-SM-7KUL1 60-69 years, male 321.5
GTEX-17EVP-0011-R8b-SM-7DUF9 40-49 years, male 319.3
GTEX-1CAMQ-0011-R8a-SM-ARU85 40-49 years, male 313.1
GTEX-1H23P-0011-R8b-SM-A9G1G 60-69 years, male 301.3
GTEX-XMD1-0011-R8A-SM-4AT48 60-69 years, male 298.4
GTEX-1HB9E-0011-R8b-SM-A9G1O 50-59 years, male 297.6
GTEX-1HBPI-0011-R8a-SM-A9G1S 50-59 years, male 288.3
GTEX-R55E-0011-R8A-SM-2TC66 20-29 years, male 287.0
GTEX-145LS-0011-R8b-SM-5PNXA 60-69 years, female 286.4
GTEX-13OW6-0011-R8a-SM-5L3GF 50-59 years, male 286.3
GTEX-13G51-0011-R8b-SM-5LZZ4 60-69 years, male 285.7
GTEX-18464-0011-R8a-SM-72D4Z 50-59 years, male 284.2
GTEX-XLM4-0011-R8A-SM-4AT44 60-69 years, male 254.6
GTEX-QDT8-0011-R8A-SM-32PKE 30-39 years, female 250.1
GTEX-X4EP-0011-R8B-SM-4QASL 60-69 years, female 178.0
GTEX-1H3VE-0011-R8b-SM-A9G1L 40-49 years, male 171.1
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HYPOTHALAMUS - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 102.5
Pig sample Sample description nTPM
Hypothalamus
nTPM: 102.5
Samples: 4

Max nTPM: 145.0
Min nTPM: 67.4
Sample A Female 145.0
Sample B Female 112.3
Sample C Male 85.4
Sample D Male 67.4

HYPOTHALAMUS - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
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Average nTPM 1117.8
Mouse sample Sample description nTPM
Hypothalamus
nTPM: 1117.8
Samples: 4

Max nTPM: 1207.8
Min nTPM: 1022.0
Sample A Male 1022.0
Sample B Male 1207.8
Sample C Female 1139.1
Sample D Female 1102.3

HYPOTHALAMUS - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

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Max Expression energy 5.3
Allen experiment id Experiment description Expression energy
Hypothalamus
Expression energy: 5.3
67862431 Antisense, RP_041018_01_C03, Mouse strain C57BL/6J (56 days, male) 5.3
68203444 Antisense, RP_041018_01_C03, Mouse strain C57BL/6J (56 days, male) 3.8

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