BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Low
Neuronal cells: Medium
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:63.3 nTPM
HPA:63.3 nTPM
GTEx:62.5 nTPM
FANTOM5:61.1 Scaled Tags Per Million
Mouse:7.7 nTPM

CAUDATE - Antibody stainingi
Antibody HPA042174Antibody HPA047849
Glial cells Not detectedMedium
Neuronal cells HighLow




BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 63.3
Sample id Sample description nTPM
Caudate nucleus
nTPM: 60.9
1857 Female, age 85, left hemisphere 63.4
2288 Male, age 75, left hemisphere 62.7
1854 Male, age 80, left hemisphere 62.5
2846 Female, age 79, unknown 62.2
1781 Male, age 74, unknown 60.3
2289 Male, age 61, right hemisphere 60.0
2290 Female, age 72, unknown 58.2
2481 Female, age 94, left hemisphere 57.7
Claustrum
nTPM: 59.1
2645 Female, age 72, unknown 64.4
2392 Female, age 94, both hemispheres 60.2
2196 Female, age 79, unknown 58.8
2284 Female, age 91, both hemispheres 58.8
2491 Male, age 75, both hemispheres 58.7
2292 Female, age 85, both hemispheres 58.3
2568 Male, age 61, both hemispheres 58.1
1956 Male, age 74, unknown 58.0
2198 Male, age 80, both hemispheres 56.2
Globus pallidus, externus
nTPM: 56.4
2395 Male, age 75, both hemispheres 58.8
2567 Female, age 72, unknown 57.8
2772 Female, age 79, unknown 56.6
1996 Male, age 80, right hemisphere 55.2
2646 Male, age 61, right hemisphere 53.6
Globus pallidus, internus
nTPM: 57.3
2778 Female, age 91, both hemispheres 60.9
2566 Female, age 72, unknown 58.8
2111 Female, age 85, right hemisphere 58.4
2287 Male, age 75, right hemisphere 57.3
2037 Male, age 80, right hemisphere 55.8
1818 Male, age 74, unknown 55.3
2483 Female, age 94, right hemisphere 54.7
Nucleus accumbens
nTPM: 60.6
2824 Male, age 61, right hemisphere 64.7
1783 Male, age 74, unknown 61.7
1856 Female, age 91, right hemisphere 60.9
2286 Male, age 75, left hemisphere 60.2
2698 Female, age 72, unknown 59.9
1806 Female, age 85, left hemisphere 59.7
2732 Male, age 80, right hemisphere 59.7
2391 Female, age 94, left hemisphere 58.3
Nucleus basalis of Meynert
nTPM: 57.2
2393 Male, age 80, right hemisphere 60.3
2821 Male, age 75, both hemispheres 59.1
2484 Female, age 94, left hemisphere 57.7
2569 Male, age 61, both hemispheres 51.9
Nucleus of the diagonal band
nTPM: 63.3
1979 Male, age 74, unknown 67.0
2195 Female, age 85, both hemispheres 65.2
2029 Male, age 61, right hemisphere 63.5
1812 Female, age 91, both hemispheres 60.5
2775 Male, age 80, right hemisphere 60.5
Olfactory tubercle
nTPM: 59.2
1846 Male, age 80, right hemisphere 61.8
1998 Female, age 91, both hemispheres 60.5
2487 Female, age 94, left hemisphere 57.2
2856 Male, age 75, right hemisphere 57.2
Putamen
nTPM: 58.9
2466 Female, age 79, unknown 62.3
1838 Male, age 80, right hemisphere 62.1
1937 Female, age 91, right hemisphere 60.9
1829 Male, age 74, unknown 58.6
2489 Female, age 72, unknown 56.7
2482 Female, age 94, left hemisphere 56.3
2647 Male, age 75, left hemisphere 55.7
Septal nuclei
nTPM: 61.3
1960 Male, age 74, unknown 64.4
2059 Female, age 85, both hemispheres 64.2
2031 Female, age 72, unknown 61.6
2009 Female, age 91, both hemispheres 61.1
2629 Female, age 94, right hemisphere 60.3
2199 Male, age 80, right hemisphere 59.4
2394 Male, age 61, left hemisphere 57.8

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 62.5
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 61.4
Samples: 246

Max nTPM: 110.4
Min nTPM: 31.0
Std nTPM: 11.1
Median nTPM: 60.1
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 110.4
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 105.4
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 101.2
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 95.7
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 88.6
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 88.1
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 88.0
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 87.3
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 85.2
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 84.8
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 84.0
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 62.5
Samples: 246

Max nTPM: 136.6
Min nTPM: 27.5
Std nTPM: 13.2
Median nTPM: 61.7
GTEX-12WSH-0011-R6b-SM-5P9F4 50-59 years, male 136.6
GTEX-13N2G-0011-R6b-SM-5MR3P 60-69 years, male 111.2
GTEX-NL3H-0011-R6a-SM-2I3G8 60-69 years, male 105.4
GTEX-1HR9M-0011-R6a-SM-ARU6Z 60-69 years, male 103.8
GTEX-NL4W-0011-R6a-SM-2I3GA 50-59 years, male 97.9
GTEX-13QJC-0011-R6a-SM-5S2VI 60-69 years, female 96.0
GTEX-13IVO-0011-R6b-SM-5K7X9 70-79 years, male 94.9
GTEX-11DZ1-0011-R6b-SM-DNZZG 50-59 years, male 94.8
GTEX-NPJ8-0011-R6a-SM-2HMKB 40-49 years, male 94.2
GTEX-14LZ3-0011-R6a-SM-D3L8C 60-69 years, female 93.4
GTEX-13NYS-0011-R6b-SM-5MR3R 60-69 years, male 90.2
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Brain - Putamen (basal ganglia)
Average nTPM: 62.5
Samples: 205

Max nTPM: 133.8
Min nTPM: 36.5
Std nTPM: 11.5
Median nTPM: 61.0
GTEX-13N2G-0011-R7a-SM-5MR42 60-69 years, male 133.8
GTEX-11DZ1-0011-R7a-SM-DNZZH 50-59 years, male 109.2
GTEX-1B996-0011-R7b-SM-7IGNT 60-69 years, male 99.5
GTEX-NL3H-0011-R7a-SM-2I3G5 60-69 years, male 93.3
GTEX-NPJ8-0011-R7a-SM-2HMJV 40-49 years, male 92.2
GTEX-ZE9C-0011-R7a-SM-4WWCX 60-69 years, male 89.4
GTEX-1HB9E-0011-R7b-SM-A9G1Q 50-59 years, male 84.2
GTEX-1IKK5-0011-R7b-SM-A9G39 60-69 years, male 83.1
GTEX-15G19-0011-R7b-SM-6M479 60-69 years, male 82.0
GTEX-WWYW-0011-R7A-SM-3NB3H 50-59 years, female 81.6
GTEX-13QJC-0011-R7b-SM-5PNUM 60-69 years, female 81.1
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 61.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 61.1
FF:10164-103B2 76 years, female 61.1
Globus pallidus
Scaled Tags Per Million: 47.3
FF:10175-103C4 60 years, female 47.3
FF:10161-103A8 76 years, female 47.3
Nucleus accumbens
Scaled Tags Per Million: 60.4
FF:10037-101F1 23-56 years, mixed 60.4
Putamen
Scaled Tags Per Million: 59.4
FF:10176-103C5 60 years, female 59.4

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 7.7
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 7.7
Samples: 4

Max nTPM: 10.3
Min nTPM: 5.0
Sample A Male 7.1
Sample B Male 5.0
Sample C Female 10.3
Sample D Female 8.3
Septum
nTPM: 6.0
Samples: 4

Max nTPM: 11.6
Min nTPM: 3.8
Sample A Male 3.8
Sample B Male 4.8
Sample C Female 3.9
Sample D Female 11.6
Ventral forebrain
nTPM: 6.1
Samples: 4

Max nTPM: 7.5
Min nTPM: 5.2
Sample A Male 7.5
Sample B Male 6.3
Sample C Female 5.3
Sample D Female 5.2

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The Human Protein Atlas

The Human Protein Atlas project is funded
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