MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:58.5 nTPM
HPA:58.5 nTPM
GTEx:57.7 nTPM
FANTOM5:50.8 Scaled Tags Per Million
Mouse:3.4 nTPM

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 58.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 56.5
2219 Male, age 76, both hemispheres 59.5
1833 Male, age 53, unknown 58.7
2411 Female, age 72, unknown 58.1
1870 Female, age 42, unknown 57.6
1830 Male, age 51, unknown 57.1
1827 Male, age 72, unknown 56.3
2019 Male, age 18, unknown 56.1
2828 Female, age 72, unknown 55.2
2586 Male, age 75, left hemisphere 54.6
2666 Male, age 74, left hemisphere 52.3
Dorsal raphe nucleus
nTPM: 56.6
2750 Male, age 76, both hemispheres 60.0
2047 Male, age 72, unknown 58.6
2298 Female, age 72, unknown 56.5
2016 Female, age 72, unknown 54.6
1828 Male, age 53, unknown 53.2
Inferior colliculus
nTPM: 56.9
2849 Male, age 72, unknown 58.4
1890 Male, age 53, unknown 57.2
1848 Female, age 42, unknown 56.3
2097 Female, age 72, unknown 55.7
Median raphe nucleus
nTPM: 56.5
2220 Male, age 76, midline 56.5
Pedunculopontine tegmental nucleus
nTPM: 56.9
2334 Male, age 80, both hemispheres 59.0
1921 Female, age 85, both hemispheres 56.7
2338 Male, age 61, both hemispheres 55.1
Periaquaductal grey, anterior
nTPM: 55.9
1947 Male, age 18, unknown 57.0
1795 Male, age 51, unknown 55.7
2502 Female, age 75, unknown 54.8
Periaquaductal grey, dorsal
nTPM: 58.1
1831 Male, age 72, unknown 59.4
2850 Male, age 76, both hemispheres 58.6
1840 Male, age 53, unknown 58.3
2464 Female, age 72, unknown 56.1
Periaquaductal grey, lateral
nTPM: 58.0
2272 Male, age 74, both hemispheres 59.7
2053 Male, age 18, unknown 58.1
2140 Male, age 76, both hemispheres 56.2
Pretectal area
nTPM: 58.5
2224 Female, age 72, unknown 60.0
2667 Female, age 75, unknown 59.6
1944 Female, age 72, unknown 59.2
2407 Male, age 75, both hemispheres 58.8
2825 Male, age 18, unknown 58.7
1815 Male, age 53, unknown 58.6
2273 Male, age 74, both hemispheres 58.5
1817 Female, age 42, unknown 58.0
2316 Male, age 76, right hemisphere 58.0
1816 Male, age 51, unknown 57.5
2007 Male, age 72, unknown 56.2
Red nucleus
nTPM: 56.5
2823 Male, age 76, right hemisphere 59.2
1821 Female, age 72, unknown 58.2
1904 Male, age 53, unknown 57.6
1865 Male, age 51, unknown 57.5
2725 Female, age 75, unknown 57.2
2584 Male, age 75, left hemisphere 56.4
2588 Male, age 74, left hemisphere 56.4
1954 Female, age 42, unknown 56.3
2227 Male, age 72, unknown 55.7
2769 Male, age 72, unknown 54.9
2503 Female, age 72, unknown 54.4
2785 Male, age 18, unknown 54.3
Substantia nigra
nTPM: 56.0
2699 Male, age 18, unknown 57.3
1851 Male, age 51, unknown 57.2
2665 Male, age 74, both hemispheres 56.6
1916 Female, age 42, unknown 56.4
1889 Female, age 72, unknown 56.3
1941 Male, age 53, unknown 56.1
2409 Female, age 72, unknown 55.9
2241 Male, age 72, unknown 54.8
2583 Male, age 75, right hemisphere 54.5
2590 Female, age 75, unknown 54.4
Superior colliculus
nTPM: 58.0
1895 Male, age 76, right hemisphere 62.1
1995 Male, age 72, unknown 59.2
2668 Female, age 75, unknown 59.0
2087 Female, age 72, unknown 58.5
2261 Male, age 18, unknown 57.8
1913 Female, age 42, unknown 57.7
2664 Male, age 75, both hemispheres 57.2
2587 Male, age 74, left hemisphere 56.5
1839 Male, age 51, unknown 56.2
1796 Male, age 53, unknown 55.9
Ventral tegmental area
nTPM: 57.2
2021 Male, age 53, unknown 58.8
2218 Male, age 76, both hemispheres 58.8
2410 Female, age 72, unknown 57.6
1942 Male, age 51, unknown 57.0
1915 Female, age 42, unknown 56.2
2223 Female, age 72, unknown 55.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 57.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 57.7
Samples: 139

Max nTPM: 92.8
Min nTPM: 38.6
Std nTPM: 10.6
Median nTPM: 56.4
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 92.8
GTEX-NL4W-0011-R2a-SM-2I5GV 50-59 years, male 92.7
GTEX-NPJ8-0011-R2a-SM-2TC6M 40-49 years, male 89.5
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 88.1
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 87.2
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 85.4
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 84.0
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 82.6
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 80.8
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 77.2
GTEX-12WSF-0011-R2a-SM-5DUVU 70-79 years, male 75.3
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 50.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 50.8
FF:10158-103A5 76 years, female 50.8

MIDBRAIN - Mouse RNA-seqi
Average nTPM 3.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 3.4
Samples: 4

Max nTPM: 7.0
Min nTPM: 1.3
Sample A Male 3.4
Sample B Male 7.0
Sample C Female 1.3
Sample D Female 1.8

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.