BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:61.5 nTPM
HPA:61.5 nTPM
GTEx:43.9 nTPM
FANTOM5:104.8 Scaled Tags Per Million

CAUDATE - Antibody stainingi
Antibody HPA039713
Glial cells Not detected
Neuronal cells Not detected


BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 61.5
Sample id Sample description nTPM
Caudate nucleus
nTPM: 50.0
2288 Male, age 75, left hemisphere 55.7
2481 Female, age 94, left hemisphere 53.4
1781 Male, age 74, unknown 49.9
2846 Female, age 79, unknown 49.8
2290 Female, age 72, unknown 48.6
2289 Male, age 61, right hemisphere 48.2
1854 Male, age 80, left hemisphere 47.8
1857 Female, age 85, left hemisphere 47.0
Claustrum
nTPM: 60.7
2392 Female, age 94, both hemispheres 65.9
2568 Male, age 61, both hemispheres 65.5
1956 Male, age 74, unknown 63.4
2491 Male, age 75, both hemispheres 62.3
2198 Male, age 80, both hemispheres 61.9
2292 Female, age 85, both hemispheres 58.5
2284 Female, age 91, both hemispheres 57.3
2645 Female, age 72, unknown 56.1
2196 Female, age 79, unknown 55.7
Globus pallidus, externus
nTPM: 60.2
2772 Female, age 79, unknown 71.2
2395 Male, age 75, both hemispheres 62.2
1996 Male, age 80, right hemisphere 61.9
2567 Female, age 72, unknown 54.2
2646 Male, age 61, right hemisphere 51.5
Globus pallidus, internus
nTPM: 61.5
2287 Male, age 75, right hemisphere 72.9
2778 Female, age 91, both hemispheres 70.1
2111 Female, age 85, right hemisphere 60.8
1818 Male, age 74, unknown 58.3
2037 Male, age 80, right hemisphere 57.1
2483 Female, age 94, right hemisphere 56.0
2566 Female, age 72, unknown 55.4
Nucleus accumbens
nTPM: 51.5
2391 Female, age 94, left hemisphere 58.2
2286 Male, age 75, left hemisphere 54.9
2698 Female, age 72, unknown 51.6
2732 Male, age 80, right hemisphere 51.5
2824 Male, age 61, right hemisphere 50.9
1806 Female, age 85, left hemisphere 48.9
1856 Female, age 91, right hemisphere 48.8
1783 Male, age 74, unknown 47.3
Nucleus basalis of Meynert
nTPM: 49.5
2484 Female, age 94, left hemisphere 51.8
2821 Male, age 75, both hemispheres 50.4
2569 Male, age 61, both hemispheres 48.6
2393 Male, age 80, right hemisphere 47.0
Nucleus of the diagonal band
nTPM: 58.1
1812 Female, age 91, both hemispheres 61.7
2029 Male, age 61, right hemisphere 61.7
2775 Male, age 80, right hemisphere 60.0
2195 Female, age 85, both hemispheres 57.9
1979 Male, age 74, unknown 49.1
Olfactory tubercle
nTPM: 57.5
2487 Female, age 94, left hemisphere 59.9
1998 Female, age 91, both hemispheres 59.8
1846 Male, age 80, right hemisphere 57.1
2856 Male, age 75, right hemisphere 53.1
Putamen
nTPM: 50.2
1937 Female, age 91, right hemisphere 51.8
2647 Male, age 75, left hemisphere 51.6
2482 Female, age 94, left hemisphere 51.2
1829 Male, age 74, unknown 50.7
2466 Female, age 79, unknown 50.7
2489 Female, age 72, unknown 47.9
1838 Male, age 80, right hemisphere 47.4
Septal nuclei
nTPM: 55.4
2031 Female, age 72, unknown 61.1
1960 Male, age 74, unknown 60.6
2629 Female, age 94, right hemisphere 56.0
2009 Female, age 91, both hemispheres 55.9
2394 Male, age 61, left hemisphere 54.6
2059 Female, age 85, both hemispheres 53.0
2199 Male, age 80, right hemisphere 46.7

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 43.9
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 38.0
Samples: 246

Max nTPM: 66.7
Min nTPM: 21.5
Std nTPM: 8.8
Median nTPM: 36.8
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 66.7
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 65.9
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 65.1
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 61.2
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 60.6
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 60.3
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 59.6
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 58.5
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 57.8
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 57.7
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 57.3
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 35.2
Samples: 246

Max nTPM: 118.0
Min nTPM: 15.1
Std nTPM: 11.2
Median nTPM: 33.1
GTEX-1HFI6-0011-R6b-SM-CM2SR 40-49 years, male 118.0
GTEX-1C6WA-0011-R6a-SM-7PBYP 60-69 years, male 82.9
GTEX-ZUA1-0011-R6b-SM-4YCDD 40-49 years, male 82.1
GTEX-YFC4-0011-R6b-SM-4V6E1 40-49 years, female 79.9
GTEX-11DYG-0011-R6a-SM-DO936 60-69 years, male 79.2
GTEX-11DXW-0011-R6a-SM-DO11N 40-49 years, male 74.8
GTEX-1I1HK-0011-R6b-SM-CM2T9 60-69 years, male 63.1
GTEX-13N1W-0011-R6a-SM-5MR43 70-79 years, male 63.0
GTEX-ZAB4-0011-R6a-SM-4SOKD 40-49 years, male 59.2
GTEX-YJ89-0011-R6a-SM-4V6GN 60-69 years, male 58.6
GTEX-1H3O1-0011-R6b-SM-CL54U 60-69 years, male 58.3
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Brain - Putamen (basal ganglia)
Average nTPM: 43.9
Samples: 205

Max nTPM: 105.1
Min nTPM: 18.6
Std nTPM: 12.0
Median nTPM: 41.2
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 105.1
GTEX-1I1CD-0011-R7a-SM-CMKHA 60-69 years, female 97.0
GTEX-ZVZQ-0011-R7b-SM-57WBB 60-69 years, female 91.1
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 80.9
GTEX-1C6WA-0011-R7b-SM-7P8S8 60-69 years, male 73.9
GTEX-Z93S-0011-R7b-SM-4RGNK 50-59 years, male 71.6
GTEX-1GN73-0011-R7a-SM-CJI2U 60-69 years, male 70.5
GTEX-1LSNL-0011-R7a-SM-EYYWI 50-59 years, male 70.2
GTEX-1B996-0011-R7b-SM-7IGNT 60-69 years, male 70.1
GTEX-1313W-0011-R7b-SM-5DUWL 50-59 years, female 65.4
GTEX-1GZ2Q-0011-R7b-SM-9OSWN 40-49 years, male 64.3
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 104.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 51.8
FF:10164-103B2 76 years, female 51.8
Globus pallidus
Scaled Tags Per Million: 104.8
FF:10175-103C4 60 years, female 132.6
FF:10161-103A8 76 years, female 77.1
Nucleus accumbens
Scaled Tags Per Million: 89.5
FF:10037-101F1 23-56 years, mixed 89.5
Putamen
Scaled Tags Per Million: 70.8
FF:10176-103C5 60 years, female 70.8

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The Human Protein Atlas

The Human Protein Atlas project is funded
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