MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:63.6 nTPM
HPA:63.6 nTPM
GTEx:66.2 nTPM
FANTOM5:113.6 Scaled Tags Per Million

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 63.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 57.3
2411 Female, age 72, unknown 68.1
1870 Female, age 42, unknown 66.1
1833 Male, age 53, unknown 59.7
2019 Male, age 18, unknown 58.8
1830 Male, age 51, unknown 57.1
2828 Female, age 72, unknown 55.0
1827 Male, age 72, unknown 54.1
2219 Male, age 76, both hemispheres 52.5
2666 Male, age 74, left hemisphere 51.1
2586 Male, age 75, left hemisphere 50.8
Dorsal raphe nucleus
nTPM: 58.1
2750 Male, age 76, both hemispheres 63.1
2298 Female, age 72, unknown 58.3
2047 Male, age 72, unknown 57.1
2016 Female, age 72, unknown 56.2
1828 Male, age 53, unknown 55.7
Inferior colliculus
nTPM: 55.6
2097 Female, age 72, unknown 58.7
1848 Female, age 42, unknown 55.8
1890 Male, age 53, unknown 55.4
2849 Male, age 72, unknown 52.3
Median raphe nucleus
nTPM: 58.7
2220 Male, age 76, midline 58.7
Pedunculopontine tegmental nucleus
nTPM: 57.0
1921 Female, age 85, both hemispheres 62.2
2334 Male, age 80, both hemispheres 59.5
2338 Male, age 61, both hemispheres 49.3
Periaquaductal grey, anterior
nTPM: 55.3
2502 Female, age 75, unknown 57.4
1947 Male, age 18, unknown 56.9
1795 Male, age 51, unknown 51.7
Periaquaductal grey, dorsal
nTPM: 52.7
2464 Female, age 72, unknown 56.5
1840 Male, age 53, unknown 52.2
2850 Male, age 76, both hemispheres 51.2
1831 Male, age 72, unknown 51.0
Periaquaductal grey, lateral
nTPM: 51.1
2053 Male, age 18, unknown 52.1
2140 Male, age 76, both hemispheres 51.9
2272 Male, age 74, both hemispheres 49.2
Pretectal area
nTPM: 54.1
2224 Female, age 72, unknown 56.9
2007 Male, age 72, unknown 55.5
2825 Male, age 18, unknown 55.3
1817 Female, age 42, unknown 54.8
2667 Female, age 75, unknown 54.7
2316 Male, age 76, right hemisphere 54.2
1815 Male, age 53, unknown 54.1
1944 Female, age 72, unknown 53.0
2407 Male, age 75, both hemispheres 53.0
1816 Male, age 51, unknown 52.0
2273 Male, age 74, both hemispheres 51.2
Red nucleus
nTPM: 63.6
1821 Female, age 72, unknown 71.3
1954 Female, age 42, unknown 68.9
1904 Male, age 53, unknown 68.3
2769 Male, age 72, unknown 65.6
1865 Male, age 51, unknown 65.4
2227 Male, age 72, unknown 64.4
2503 Female, age 72, unknown 63.0
2588 Male, age 74, left hemisphere 61.4
2725 Female, age 75, unknown 61.2
2785 Male, age 18, unknown 61.0
2823 Male, age 76, right hemisphere 60.0
2584 Male, age 75, left hemisphere 53.0
Substantia nigra
nTPM: 55.7
2241 Male, age 72, unknown 61.2
2409 Female, age 72, unknown 59.1
1851 Male, age 51, unknown 58.7
1889 Female, age 72, unknown 57.6
1916 Female, age 42, unknown 57.6
1941 Male, age 53, unknown 55.3
2583 Male, age 75, right hemisphere 54.0
2590 Female, age 75, unknown 53.7
2699 Male, age 18, unknown 52.2
2665 Male, age 74, both hemispheres 47.6
Superior colliculus
nTPM: 54.4
2587 Male, age 74, left hemisphere 57.4
1895 Male, age 76, right hemisphere 57.3
1839 Male, age 51, unknown 55.9
1913 Female, age 42, unknown 55.1
2668 Female, age 75, unknown 54.6
1796 Male, age 53, unknown 54.3
1995 Male, age 72, unknown 53.7
2261 Male, age 18, unknown 53.1
2087 Female, age 72, unknown 51.7
2664 Male, age 75, both hemispheres 50.4
Ventral tegmental area
nTPM: 58.1
2410 Female, age 72, unknown 64.9
1915 Female, age 42, unknown 58.7
2223 Female, age 72, unknown 58.0
1942 Male, age 51, unknown 57.2
2218 Male, age 76, both hemispheres 55.9
2021 Male, age 53, unknown 54.2

MIDBRAIN - GTEx RNA-seqi
Average nTPM 66.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 66.2
Samples: 139

Max nTPM: 163.9
Min nTPM: 27.2
Std nTPM: 20.4
Median nTPM: 64.7
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 163.9
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 131.5
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 112.9
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 112.8
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 111.0
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 104.7
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 100.5
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 100.4
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 93.5
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 91.7
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 90.8
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 113.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 113.6
FF:10158-103A5 76 years, female 113.6

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The Human Protein Atlas

The Human Protein Atlas project is funded
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