MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:935.2 nTPM
HPA:935.2 nTPM
GTEx:767.8 nTPM
FANTOM5:63.2 Scaled Tags Per Million
Pig:258.5 nTPM
Mouse:266.6 nTPM
Allen mouse:9.6 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 935.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 894.5
2586 Male, age 75, left hemisphere 968.6
1870 Female, age 42, unknown 921.3
2411 Female, age 72, unknown 912.0
2666 Male, age 74, left hemisphere 903.5
1827 Male, age 72, unknown 901.4
2828 Female, age 72, unknown 900.8
1833 Male, age 53, unknown 872.5
1830 Male, age 51, unknown 867.2
2019 Male, age 18, unknown 851.8
2219 Male, age 76, both hemispheres 846.1
Dorsal raphe nucleus
nTPM: 903.5
2298 Female, age 72, unknown 936.6
2047 Male, age 72, unknown 904.3
2750 Male, age 76, both hemispheres 901.5
2016 Female, age 72, unknown 897.6
1828 Male, age 53, unknown 877.5
Inferior colliculus
nTPM: 900.3
2097 Female, age 72, unknown 917.4
1848 Female, age 42, unknown 903.3
1890 Male, age 53, unknown 898.1
2849 Male, age 72, unknown 882.2
Median raphe nucleus
nTPM: 879.3
2220 Male, age 76, midline 879.3
Pedunculopontine tegmental nucleus
nTPM: 883.4
2334 Male, age 80, both hemispheres 912.8
1921 Female, age 85, both hemispheres 870.3
2338 Male, age 61, both hemispheres 867.1
Periaquaductal grey, anterior
nTPM: 935.2
2502 Female, age 75, unknown 991.4
1947 Male, age 18, unknown 926.3
1795 Male, age 51, unknown 887.9
Periaquaductal grey, dorsal
nTPM: 882.8
1840 Male, age 53, unknown 933.4
2464 Female, age 72, unknown 884.9
1831 Male, age 72, unknown 877.0
2850 Male, age 76, both hemispheres 836.0
Periaquaductal grey, lateral
nTPM: 861.5
2053 Male, age 18, unknown 926.9
2272 Male, age 74, both hemispheres 835.6
2140 Male, age 76, both hemispheres 822.0
Pretectal area
nTPM: 874.4
2825 Male, age 18, unknown 890.9
2316 Male, age 76, right hemisphere 889.8
1816 Male, age 51, unknown 889.2
2224 Female, age 72, unknown 884.8
2407 Male, age 75, both hemispheres 883.8
1817 Female, age 42, unknown 882.3
1815 Male, age 53, unknown 879.1
2007 Male, age 72, unknown 876.0
1944 Female, age 72, unknown 860.4
2273 Male, age 74, both hemispheres 843.1
2667 Female, age 75, unknown 838.7
Red nucleus
nTPM: 903.4
2503 Female, age 72, unknown 941.3
1821 Female, age 72, unknown 940.2
2584 Male, age 75, left hemisphere 932.3
2769 Male, age 72, unknown 928.9
2227 Male, age 72, unknown 915.5
1865 Male, age 51, unknown 913.7
1904 Male, age 53, unknown 912.7
2588 Male, age 74, left hemisphere 886.6
1954 Female, age 42, unknown 885.2
2725 Female, age 75, unknown 880.6
2785 Male, age 18, unknown 857.4
2823 Male, age 76, right hemisphere 846.8
Substantia nigra
nTPM: 916.2
1851 Male, age 51, unknown 980.6
2665 Male, age 74, both hemispheres 939.7
2590 Female, age 75, unknown 931.0
2699 Male, age 18, unknown 922.2
1916 Female, age 42, unknown 917.2
1889 Female, age 72, unknown 900.5
2241 Male, age 72, unknown 897.5
2409 Female, age 72, unknown 893.4
2583 Male, age 75, right hemisphere 893.4
1941 Male, age 53, unknown 886.9
Superior colliculus
nTPM: 899.2
2664 Male, age 75, both hemispheres 950.1
2587 Male, age 74, left hemisphere 939.0
2261 Male, age 18, unknown 900.1
1839 Male, age 51, unknown 899.4
2668 Female, age 75, unknown 897.8
1796 Male, age 53, unknown 891.0
1913 Female, age 42, unknown 891.0
1995 Male, age 72, unknown 886.3
1895 Male, age 76, right hemisphere 873.2
2087 Female, age 72, unknown 864.1
Ventral tegmental area
nTPM: 919.2
2410 Female, age 72, unknown 947.6
2021 Male, age 53, unknown 936.9
1915 Female, age 42, unknown 929.3
2223 Female, age 72, unknown 915.1
1942 Male, age 51, unknown 902.4
2218 Male, age 76, both hemispheres 884.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 767.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 767.8
Samples: 139

Max nTPM: 1454.6
Min nTPM: 350.5
Std nTPM: 189.3
Median nTPM: 742.7
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 1454.6
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 1320.3
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 1279.9
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 1277.8
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 1215.9
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 1150.1
GTEX-1HR98-0011-R2a-SM-ARL7A 60-69 years, male 1144.5
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 1125.9
GTEX-1EU9M-0011-R2b-SM-9QEH7 60-69 years, male 1046.0
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 1030.2
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 1026.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 63.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 63.2
FF:10158-103A5 76 years, female 63.2

MIDBRAIN - Pig RNA-seqi
Average nTPM 258.5
Pig sample Sample description nTPM
Midbrain
nTPM: 243.6
Samples: 4

Max nTPM: 264.2
Min nTPM: 220.4
Sample A Female 256.9
Sample B Female 220.4
Sample C Male 264.2
Sample D Male 232.7
Periaqueductal gray
nTPM: 182.0
Samples: 3

Max nTPM: 207.7
Min nTPM: 157.0
Sample B Female 181.2
Sample C Male 207.7
Sample D Male 157.0
Substantia nigra
nTPM: 209.6
Samples: 4

Max nTPM: 263.3
Min nTPM: 169.8
Sample A Female 263.3
Sample B Female 193.7
Sample C Male 211.4
Sample D Male 169.8
Superior colliculi
nTPM: 258.5
Samples: 4

Max nTPM: 285.9
Min nTPM: 222.5
Sample A Female 285.9
Sample B Female 270.1
Sample C Male 255.6
Sample D Male 222.5

MIDBRAIN - Mouse RNA-seqi
Average nTPM 266.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 266.6
Samples: 4

Max nTPM: 291.1
Min nTPM: 231.4
Sample A Male 291.1
Sample B Male 258.4
Sample C Female 231.4
Sample D Female 285.4

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 9.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 9.6
69818299 Antisense, RP_050510_04_G12, Mouse strain C57BL/6J (56 days, male) 10.0
74882810 Antisense, RP_060315_04_H02, Mouse strain C57BL/6J (56 days, male) 9.2

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.