BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Medium
Neuronal cells: High
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:67.6 nTPM
HPA:67.6 nTPM
GTEx:65.3 nTPM
FANTOM5:107.8 Scaled Tags Per Million
Pig:100.2 nTPM
Mouse:179.8 nTPM
Allen mouse:6.6 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA045192Antibody HPA062363
Glial cells MediumMedium
Neuronal cells HighHigh





BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 67.6
Sample id Sample description nTPM
Caudate nucleus
nTPM: 62.0
2481 Female, age 94, left hemisphere 67.3
1857 Female, age 85, left hemisphere 65.0
1854 Male, age 80, left hemisphere 62.5
2846 Female, age 79, unknown 62.3
2288 Male, age 75, left hemisphere 62.1
2290 Female, age 72, unknown 62.0
1781 Male, age 74, unknown 61.2
2289 Male, age 61, right hemisphere 53.8
Claustrum
nTPM: 61.2
2198 Male, age 80, both hemispheres 68.8
2491 Male, age 75, both hemispheres 64.2
1956 Male, age 74, unknown 62.0
2568 Male, age 61, both hemispheres 60.7
2392 Female, age 94, both hemispheres 60.4
2645 Female, age 72, unknown 60.2
2196 Female, age 79, unknown 59.6
2284 Female, age 91, both hemispheres 58.8
2292 Female, age 85, both hemispheres 56.2
Globus pallidus, externus
nTPM: 65.5
2772 Female, age 79, unknown 71.5
2395 Male, age 75, both hemispheres 69.4
1996 Male, age 80, right hemisphere 64.7
2646 Male, age 61, right hemisphere 64.4
2567 Female, age 72, unknown 57.4
Globus pallidus, internus
nTPM: 64.0
2483 Female, age 94, right hemisphere 74.0
2287 Male, age 75, right hemisphere 71.2
2037 Male, age 80, right hemisphere 63.8
2778 Female, age 91, both hemispheres 63.5
1818 Male, age 74, unknown 63.1
2566 Female, age 72, unknown 56.5
2111 Female, age 85, right hemisphere 56.0
Nucleus accumbens
nTPM: 62.2
2286 Male, age 75, left hemisphere 68.1
1783 Male, age 74, unknown 66.2
1856 Female, age 91, right hemisphere 65.8
1806 Female, age 85, left hemisphere 62.7
2824 Male, age 61, right hemisphere 61.0
2698 Female, age 72, unknown 60.5
2391 Female, age 94, left hemisphere 57.5
2732 Male, age 80, right hemisphere 55.7
Nucleus basalis of Meynert
nTPM: 61.8
2569 Male, age 61, both hemispheres 67.5
2393 Male, age 80, right hemisphere 61.8
2821 Male, age 75, both hemispheres 59.5
2484 Female, age 94, left hemisphere 58.7
Nucleus of the diagonal band
nTPM: 67.6
2775 Male, age 80, right hemisphere 77.0
1812 Female, age 91, both hemispheres 70.7
2195 Female, age 85, both hemispheres 65.4
2029 Male, age 61, right hemisphere 64.9
1979 Male, age 74, unknown 60.1
Olfactory tubercle
nTPM: 64.9
1846 Male, age 80, right hemisphere 68.7
1998 Female, age 91, both hemispheres 67.7
2487 Female, age 94, left hemisphere 62.7
2856 Male, age 75, right hemisphere 60.5
Putamen
nTPM: 63.2
2466 Female, age 79, unknown 65.7
1838 Male, age 80, right hemisphere 65.3
2482 Female, age 94, left hemisphere 65.0
2647 Male, age 75, left hemisphere 64.2
1937 Female, age 91, right hemisphere 63.0
1829 Male, age 74, unknown 61.1
2489 Female, age 72, unknown 58.0
Septal nuclei
nTPM: 64.1
1960 Male, age 74, unknown 73.2
2031 Female, age 72, unknown 71.8
2009 Female, age 91, both hemispheres 65.3
2059 Female, age 85, both hemispheres 62.4
2394 Male, age 61, left hemisphere 59.2
2629 Female, age 94, right hemisphere 58.8
2199 Male, age 80, right hemisphere 57.9

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 65.3
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 60.9
Samples: 246

Max nTPM: 89.2
Min nTPM: 42.9
Std nTPM: 8.5
Median nTPM: 60.3
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 89.2
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 84.2
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 84.1
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 83.3
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 82.4
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 80.7
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 80.4
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 78.3
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 78.3
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 77.7
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 77.7
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 65.3
Samples: 246

Max nTPM: 103.1
Min nTPM: 39.8
Std nTPM: 11.1
Median nTPM: 65.7
GTEX-145MH-0011-R6a-SM-5PNZ7 50-59 years, male 103.1
GTEX-13X6J-0011-R6a-SM-5PNUB 50-59 years, male 93.0
GTEX-1I1CD-0011-R6b-SM-CJI3Y 60-69 years, female 90.4
GTEX-17MF6-0011-R6b-SM-7LG6G 40-49 years, male 88.3
GTEX-NL3H-0011-R6a-SM-2I3G8 60-69 years, male 86.8
GTEX-N7MS-0011-R6a-SM-2HMJ4 60-69 years, male 86.5
GTEX-1ICLZ-0011-R6b-SM-A9G3A 60-69 years, male 85.8
GTEX-X4EP-0011-R6A-SM-3P629 60-69 years, female 85.3
GTEX-1AX9I-0011-R6a-SM-7P8PK 60-69 years, male 84.8
GTEX-1F75A-0011-R6b-SM-9QEHD 50-59 years, male 84.5
GTEX-13JVG-0011-R6a-SM-5MR3E 60-69 years, male 84.4
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Brain - Putamen (basal ganglia)
Average nTPM: 63.0
Samples: 205

Max nTPM: 92.1
Min nTPM: 40.3
Std nTPM: 8.2
Median nTPM: 62.2
GTEX-1H3VE-0011-R7b-SM-CE6S9 40-49 years, male 92.1
GTEX-NL3H-0011-R7a-SM-2I3G5 60-69 years, male 85.3
GTEX-11PRG-0011-R7a-SM-DNZZT 50-59 years, male 84.4
GTEX-14PN4-0011-R7b-SM-69LQQ 50-59 years, male 83.8
GTEX-1R46S-0011-R7b-SM-EXUTH 60-69 years, female 83.3
GTEX-13JVG-0011-R7b-SM-5MR3Q 60-69 years, male 80.8
GTEX-1EH9U-0011-R7a-SM-9QEGU 60-69 years, male 79.6
GTEX-S7SE-0011-R7A-SM-2XCDI 50-59 years, male 79.1
GTEX-17HG3-0011-R7b-SM-7EPGR 30-39 years, female 78.9
GTEX-15CHQ-0011-R7b-SM-D4P1Q 60-69 years, male 78.5
GTEX-17MF6-0011-R7b-SM-7LG6J 40-49 years, male 78.1
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 107.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 107.8
FF:10164-103B2 76 years, female 107.8
Globus pallidus
Scaled Tags Per Million: 85.7
FF:10161-103A8 76 years, female 91.0
FF:10175-103C4 60 years, female 80.5
Nucleus accumbens
Scaled Tags Per Million: 84.6
FF:10037-101F1 23-56 years, mixed 84.6
Putamen
Scaled Tags Per Million: 87.5
FF:10176-103C5 60 years, female 87.5

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 100.2
Pig sample Sample description nTPM
Caudate
nTPM: 98.3
Samples: 4

Max nTPM: 116.6
Min nTPM: 82.4
Sample A Female 82.4
Sample B Female 104.3
Sample C Male 116.6
Sample D Male 90.0
Putamen
nTPM: 100.2
Samples: 4

Max nTPM: 131.6
Min nTPM: 82.3
Sample A Female 82.3
Sample B Female 85.7
Sample C Male 131.6
Sample D Male 101.0
Septum
nTPM: 92.9
Samples: 4

Max nTPM: 127.1
Min nTPM: 66.8
Sample A Female 93.9
Sample B Female 83.7
Sample C Male 127.1
Sample D Male 66.8
Ventral pallidum
nTPM: 92.3
Samples: 4

Max nTPM: 113.3
Min nTPM: 80.5
Sample A Female 81.8
Sample B Female 93.5
Sample C Male 113.3
Sample D Male 80.5

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 179.8
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 172.0
Samples: 4

Max nTPM: 178.8
Min nTPM: 164.7
Sample A Male 178.8
Sample B Male 172.5
Sample C Female 164.7
Sample D Female 172.1
Septum
nTPM: 179.8
Samples: 4

Max nTPM: 188.1
Min nTPM: 171.3
Sample A Male 172.7
Sample B Male 188.1
Sample C Female 187.2
Sample D Female 171.3
Ventral forebrain
nTPM: 167.5
Samples: 4

Max nTPM: 175.3
Min nTPM: 154.0
Sample A Male 154.0
Sample B Male 175.3
Sample C Female 169.4
Sample D Female 171.3

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 6.6
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 6.6
68157415 Antisense, RP_041116_02_F08, Mouse strain C57BL/6J (56 days, male) 6.6
Pallidum
Expression energy: 5.0
68157415 Antisense, RP_041116_02_F08, Mouse strain C57BL/6J (56 days, male) 5.0

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