MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:81.1 nTPM
HPA:81.1 nTPM
GTEx:70.3 nTPM
FANTOM5:64.6 Scaled Tags Per Million
Pig:110.7 nTPM
Mouse:160.2 nTPM
Allen mouse:7.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 81.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 68.4
2666 Male, age 74, left hemisphere 75.0
2586 Male, age 75, left hemisphere 72.9
1827 Male, age 72, unknown 71.6
2411 Female, age 72, unknown 70.9
2219 Male, age 76, both hemispheres 68.5
2019 Male, age 18, unknown 67.8
1870 Female, age 42, unknown 66.4
2828 Female, age 72, unknown 66.2
1833 Male, age 53, unknown 64.9
1830 Male, age 51, unknown 59.7
Dorsal raphe nucleus
nTPM: 72.0
2298 Female, age 72, unknown 79.3
2047 Male, age 72, unknown 75.0
1828 Male, age 53, unknown 72.8
2750 Male, age 76, both hemispheres 69.9
2016 Female, age 72, unknown 63.1
Inferior colliculus
nTPM: 64.2
2097 Female, age 72, unknown 68.6
1890 Male, age 53, unknown 64.1
1848 Female, age 42, unknown 63.6
2849 Male, age 72, unknown 60.3
Median raphe nucleus
nTPM: 71.8
2220 Male, age 76, midline 71.8
Pedunculopontine tegmental nucleus
nTPM: 66.3
2334 Male, age 80, both hemispheres 72.2
1921 Female, age 85, both hemispheres 68.2
2338 Male, age 61, both hemispheres 58.5
Periaquaductal grey, anterior
nTPM: 69.1
1947 Male, age 18, unknown 71.8
1795 Male, age 51, unknown 68.5
2502 Female, age 75, unknown 66.9
Periaquaductal grey, dorsal
nTPM: 62.8
1840 Male, age 53, unknown 69.1
2464 Female, age 72, unknown 63.2
1831 Male, age 72, unknown 59.7
2850 Male, age 76, both hemispheres 59.2
Periaquaductal grey, lateral
nTPM: 58.2
2053 Male, age 18, unknown 60.2
2140 Male, age 76, both hemispheres 59.5
2272 Male, age 74, both hemispheres 55.0
Pretectal area
nTPM: 67.5
1816 Male, age 51, unknown 78.0
2007 Male, age 72, unknown 74.5
1817 Female, age 42, unknown 73.9
1944 Female, age 72, unknown 72.7
2667 Female, age 75, unknown 69.8
1815 Male, age 53, unknown 67.9
2825 Male, age 18, unknown 64.7
2224 Female, age 72, unknown 63.6
2316 Male, age 76, right hemisphere 60.2
2273 Male, age 74, both hemispheres 59.9
2407 Male, age 75, both hemispheres 56.8
Red nucleus
nTPM: 63.9
1821 Female, age 72, unknown 72.2
2725 Female, age 75, unknown 67.3
2588 Male, age 74, left hemisphere 66.5
2503 Female, age 72, unknown 65.0
1954 Female, age 42, unknown 64.1
2785 Male, age 18, unknown 64.0
2769 Male, age 72, unknown 63.7
2227 Male, age 72, unknown 62.1
2584 Male, age 75, left hemisphere 61.2
1865 Male, age 51, unknown 61.1
1904 Male, age 53, unknown 60.6
2823 Male, age 76, right hemisphere 58.5
Substantia nigra
nTPM: 81.1
1916 Female, age 42, unknown 103.4
1851 Male, age 51, unknown 92.5
2241 Male, age 72, unknown 87.9
2409 Female, age 72, unknown 83.1
2665 Male, age 74, both hemispheres 80.3
1941 Male, age 53, unknown 79.4
1889 Female, age 72, unknown 75.4
2699 Male, age 18, unknown 74.5
2583 Male, age 75, right hemisphere 68.1
2590 Female, age 75, unknown 66.0
Superior colliculus
nTPM: 64.7
2668 Female, age 75, unknown 72.4
1796 Male, age 53, unknown 69.6
2087 Female, age 72, unknown 68.3
2261 Male, age 18, unknown 65.8
1895 Male, age 76, right hemisphere 65.7
2664 Male, age 75, both hemispheres 63.7
2587 Male, age 74, left hemisphere 63.3
1839 Male, age 51, unknown 62.4
1913 Female, age 42, unknown 59.2
1995 Male, age 72, unknown 56.9
Ventral tegmental area
nTPM: 73.7
1915 Female, age 42, unknown 84.8
2410 Female, age 72, unknown 82.5
2218 Male, age 76, both hemispheres 75.2
1942 Male, age 51, unknown 69.5
2021 Male, age 53, unknown 65.9
2223 Female, age 72, unknown 64.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 70.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 70.3
Samples: 139

Max nTPM: 170.2
Min nTPM: 35.1
Std nTPM: 23.5
Median nTPM: 63.6
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 170.2
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 147.0
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 146.5
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 137.0
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 124.8
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 122.4
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 120.8
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 114.4
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 110.8
GTEX-11GSP-0011-R2b-SM-9QEGE 60-69 years, female 109.8
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 105.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 64.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 64.6
FF:10158-103A5 76 years, female 64.6

MIDBRAIN - Pig RNA-seqi
Average nTPM 110.7
Pig sample Sample description nTPM
Midbrain
nTPM: 106.2
Samples: 4

Max nTPM: 119.6
Min nTPM: 96.2
Sample A Female 107.0
Sample B Female 96.2
Sample C Male 119.6
Sample D Male 102.0
Periaqueductal gray
nTPM: 92.6
Samples: 3

Max nTPM: 113.7
Min nTPM: 74.4
Sample B Female 89.6
Sample C Male 113.7
Sample D Male 74.4
Substantia nigra
nTPM: 110.7
Samples: 4

Max nTPM: 148.0
Min nTPM: 74.5
Sample A Female 148.0
Sample B Female 84.9
Sample C Male 135.4
Sample D Male 74.5
Superior colliculi
nTPM: 108.0
Samples: 4

Max nTPM: 126.0
Min nTPM: 82.4
Sample A Female 126.0
Sample B Female 82.4
Sample C Male 117.9
Sample D Male 105.7

MIDBRAIN - Mouse RNA-seqi
Average nTPM 160.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 160.2
Samples: 4

Max nTPM: 162.3
Min nTPM: 156.7
Sample A Male 156.7
Sample B Male 159.8
Sample C Female 162.0
Sample D Female 162.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 7.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 7.0
68157415 Antisense, RP_041116_02_F08, Mouse strain C57BL/6J (56 days, male) 7.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
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