MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:98.4 nTPM
HPA:98.4 nTPM
GTEx:78.9 nTPM
FANTOM5:83.5 Scaled Tags Per Million
Pig:5.4 nTPM
Mouse:51.2 nTPM
Allen mouse:6.9 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 98.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 94.9
2666 Male, age 74, left hemisphere 111.0
2586 Male, age 75, left hemisphere 96.8
2411 Female, age 72, unknown 96.7
2019 Male, age 18, unknown 94.6
1833 Male, age 53, unknown 93.6
1830 Male, age 51, unknown 93.4
2828 Female, age 72, unknown 92.7
1870 Female, age 42, unknown 92.2
1827 Male, age 72, unknown 91.9
2219 Male, age 76, both hemispheres 86.5
Dorsal raphe nucleus
nTPM: 93.6
1828 Male, age 53, unknown 96.7
2047 Male, age 72, unknown 94.7
2750 Male, age 76, both hemispheres 93.5
2298 Female, age 72, unknown 92.8
2016 Female, age 72, unknown 90.3
Inferior colliculus
nTPM: 91.7
1890 Male, age 53, unknown 93.0
2097 Female, age 72, unknown 92.5
2849 Male, age 72, unknown 90.9
1848 Female, age 42, unknown 90.5
Median raphe nucleus
nTPM: 95.7
2220 Male, age 76, midline 95.7
Pedunculopontine tegmental nucleus
nTPM: 91.6
2334 Male, age 80, both hemispheres 96.3
1921 Female, age 85, both hemispheres 91.7
2338 Male, age 61, both hemispheres 86.8
Periaquaductal grey, anterior
nTPM: 90.6
1947 Male, age 18, unknown 91.8
2502 Female, age 75, unknown 90.8
1795 Male, age 51, unknown 89.1
Periaquaductal grey, dorsal
nTPM: 89.3
2464 Female, age 72, unknown 90.4
2850 Male, age 76, both hemispheres 90.2
1831 Male, age 72, unknown 89.0
1840 Male, age 53, unknown 87.6
Periaquaductal grey, lateral
nTPM: 88.8
2140 Male, age 76, both hemispheres 90.6
2272 Male, age 74, both hemispheres 88.3
2053 Male, age 18, unknown 87.5
Pretectal area
nTPM: 92.0
1817 Female, age 42, unknown 95.7
1944 Female, age 72, unknown 95.3
1816 Male, age 51, unknown 94.4
2667 Female, age 75, unknown 94.1
2007 Male, age 72, unknown 93.9
1815 Male, age 53, unknown 93.8
2407 Male, age 75, both hemispheres 92.0
2825 Male, age 18, unknown 90.4
2224 Female, age 72, unknown 88.1
2316 Male, age 76, right hemisphere 88.0
2273 Male, age 74, both hemispheres 85.8
Red nucleus
nTPM: 96.9
1821 Female, age 72, unknown 102.5
1954 Female, age 42, unknown 101.7
1904 Male, age 53, unknown 98.8
2503 Female, age 72, unknown 98.8
1865 Male, age 51, unknown 97.6
2769 Male, age 72, unknown 96.3
2785 Male, age 18, unknown 96.3
2823 Male, age 76, right hemisphere 96.1
2227 Male, age 72, unknown 95.4
2584 Male, age 75, left hemisphere 94.5
2588 Male, age 74, left hemisphere 93.8
2725 Female, age 75, unknown 91.5
Substantia nigra
nTPM: 98.4
1916 Female, age 42, unknown 110.5
2409 Female, age 72, unknown 103.7
2241 Male, age 72, unknown 101.8
1851 Male, age 51, unknown 99.9
2699 Male, age 18, unknown 99.9
1889 Female, age 72, unknown 97.6
2583 Male, age 75, right hemisphere 97.2
1941 Male, age 53, unknown 94.3
2665 Male, age 74, both hemispheres 92.0
2590 Female, age 75, unknown 87.8
Superior colliculus
nTPM: 93.0
2668 Female, age 75, unknown 109.1
2087 Female, age 72, unknown 95.5
1796 Male, age 53, unknown 93.5
2261 Male, age 18, unknown 92.4
1913 Female, age 42, unknown 91.5
1995 Male, age 72, unknown 91.1
1839 Male, age 51, unknown 90.4
2587 Male, age 74, left hemisphere 89.0
2664 Male, age 75, both hemispheres 88.8
1895 Male, age 76, right hemisphere 88.6
Ventral tegmental area
nTPM: 94.9
1915 Female, age 42, unknown 101.0
2410 Female, age 72, unknown 99.7
1942 Male, age 51, unknown 94.2
2218 Male, age 76, both hemispheres 91.8
2223 Female, age 72, unknown 91.4
2021 Male, age 53, unknown 91.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 78.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 78.9
Samples: 139

Max nTPM: 338.5
Min nTPM: 36.0
Std nTPM: 48.0
Median nTPM: 64.7
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 338.5
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 329.5
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 260.8
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 223.1
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 202.9
GTEX-14C5O-0011-R2a-SM-5ZZV2 60-69 years, male 191.1
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 177.1
GTEX-WHSE-0011-R2A-SM-3P5ZL 20-29 years, male 170.3
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 162.0
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 156.9
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 146.4
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 83.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 83.5
FF:10158-103A5 76 years, female 83.5

MIDBRAIN - Pig RNA-seqi
Average nTPM 5.4
Pig sample Sample description nTPM
Midbrain
nTPM: 4.8
Samples: 4

Max nTPM: 5.8
Min nTPM: 3.4
Sample A Female 4.2
Sample B Female 5.8
Sample C Male 3.4
Sample D Male 5.6
Periaqueductal gray
nTPM: 5.4
Samples: 3

Max nTPM: 5.8
Min nTPM: 5.2
Sample B Female 5.2
Sample C Male 5.2
Sample D Male 5.8
Substantia nigra
nTPM: 5.5
Samples: 4

Max nTPM: 7.6
Min nTPM: 3.9
Sample A Female 3.9
Sample B Female 4.1
Sample C Male 6.2
Sample D Male 7.6
Superior colliculi
nTPM: 4.4
Samples: 4

Max nTPM: 5.2
Min nTPM: 2.9
Sample A Female 2.9
Sample B Female 4.3
Sample C Male 5.0
Sample D Male 5.2

MIDBRAIN - Mouse RNA-seqi
Average nTPM 51.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 51.2
Samples: 4

Max nTPM: 53.9
Min nTPM: 48.1
Sample A Male 53.9
Sample B Male 48.1
Sample C Female 49.8
Sample D Female 52.9

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 6.9
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 6.9
564779 Antisense, RP_040826_01_F06, Mouse strain C57BL/6J (56 days, male) 6.9

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.