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BRAIN RETINA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Eye
Retina
RETINA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:123.1 nTPM
GTEx:123.1 nTPM
FANTOM5:64.5 Scaled Tags Per Million
Pig:9.7 nTPM
Mouse:94.8 nTPM

RETINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 123.1
GTEx sample id Sample description nTPM
Retina
Average nTPM: 123.1
Samples: 105

Max nTPM: 456.4
Min nTPM: 60.2
Std nTPM: 45.7
Median nTPM:
308_1 70 years, female 456.4
495_1 57 years, female 257.6
384_1 83 years, male 240.0
396_1 62 years, male 177.5
447_1 81 years, male 177.1
317_1 60 years, male 176.7
322_1 76 years, male 176.6
307_1 66 years, female 175.9
120_1 70 years, female 172.4
379_1 60 years, male 168.4
316_1 62 years, male 164.2
386_1 76 years, male 163.5
139_1 64 years, female 157.9
119_1 70 years, female 156.5
404_1 82 years, female 154.9
2_1 77 years, female 151.8
145_1 84 years, male 149.3
4_1 88 years, female 148.7
321_1 62 years, female 148.0
218_1 71 years, female 145.9
389_1 86 years, female 141.4
503_1 68 years, male 139.9
376_1 75 years, female 138.6
189_1 76 years, male 138.3
17_1 71 years, male 137.5
137_1 83 years, male 136.6
375_1 74 years, female 136.5
35_1 74 years, female 135.4
452_1 88 years, female 135.0
173_1 67 years, male 133.9
347_1 72 years, male 133.2
377_1 82 years, female 131.4
394_1 75 years, female 130.2
266_1 85 years, male 127.9
99_1 64 years, male 126.9
315_1 62 years, female 125.4
466_1 57 years, female 125.3
288_1 66 years, female 124.8
518_1 75 years, female 124.3
348_1 84 years, male 123.9
353_1 82 years, female 123.8
42_1 85 years, male 123.1
314_1 67 years, male 122.8
6_1 73 years, female 122.3
237_1 82 years, male 121.7
126_1 63 years, male 120.1
41_1 94 years, female 119.0
295_1 61 years, female 118.8
89_1 63 years, male 118.2
265_1 87 years, male 117.9
18_1 88 years, male 116.9
162_1 79 years, female 115.5
43_1 64 years, female 114.1
109_1 81 years, female 114.0
177_1 74 years, male 113.6
251_1 78 years, male 112.5
291_1 76 years, male 111.8
480_1 63 years, male 111.8
229_1 69 years, female 111.3
313_1 79 years, female 109.8
468_1 89 years, male 109.5
311_1 78 years, male 107.5
354_1 81 years, female 107.4
356_1 87 years, female 106.9
405_1 91 years, male 106.9
163_1 78 years, male 106.6
286_1 68 years, female 105.7
349_1 83 years, male 105.7
350_1 84 years, female 105.0
324_1 76 years, male 104.5
153_1 70 years, female 104.3
115_1 83 years, male 104.2
352_1 62 years, male 103.9
246_1 77 years, male 102.0
335_1 73 years, female 102.0
501_1 88 years, male 101.3
413_1 59 years, female 100.6
491_1 89 years, female 99.8
425_1 59 years, female 98.9
318_1 68 years, male 98.7
526_1 61 years, male 97.8
517_1 88 years, male 97.2
293_1 68 years, female 97.0
351_1 91 years, male 96.4
319_1 81 years, male 95.9
406_1 79 years, male 93.4
499_1 55 years, female 93.2
254_1 77 years, female 93.1
117_1 61 years, male 92.9
243_1 75 years, male 91.5
415_1 77 years, female 88.6
414_1 84 years, female 87.4
292_1 71 years, male 86.8
264_1 73 years, female 86.2
9_1 66 years, female 85.9
355_1 70 years, female 84.2
81_1 67 years, male 83.8
217_1 76 years, male 82.3
506_1 65 years, male 82.2
172_1 72 years, female 80.8
149_1 88 years, male 75.4
32_1 67 years, male 72.8
320_1 89 years, female 69.5
142_1 61 years, female 68.4
490_1 67 years, female 60.2
Show allShow less

RETINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 64.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Retina
Scaled Tags Per Million: 64.5
FF:10030-101E3 24-65 years, mixed 64.5

RETINA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 9.7
Pig sample Sample description nTPM
Retina
nTPM: 9.7
Samples: 4

Max nTPM: 11.0
Min nTPM: 8.8
Sample A Female 11.0
Sample B Female 9.2
Sample C Male 9.7
Sample D Male 8.8

RETINA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 94.8
Mouse sample Sample description nTPM
Retina
nTPM: 94.8
Samples: 4

Max nTPM: 122.8
Min nTPM: 81.4
Sample A Male 82.7
Sample B Male 92.1
Sample C Female 122.8
Sample D Female 81.4

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by the Knut & Alice Wallenberg Foundation.