BASAL GANGLIA - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:34.2 nTPM
HPA:34.2 nTPM
GTEx:48.3 nTPM
FANTOM5:107.8 Scaled Tags Per Million
Pig:69.3 nTPM
Mouse:170.0 nTPM
Allen mouse:20.8 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 34.2
Sample id Sample description nTPM
Caudate nucleus
nTPM: 11.7
1781 Male, age 74, unknown 15.5
2288 Male, age 75, left hemisphere 15.1
2290 Female, age 72, unknown 14.7
2289 Male, age 61, right hemisphere 13.7
2481 Female, age 94, left hemisphere 10.7
1857 Female, age 85, left hemisphere 10.1
2846 Female, age 79, unknown 7.8
1854 Male, age 80, left hemisphere 5.8
Claustrum
nTPM: 34.2
2645 Female, age 72, unknown 48.7
2284 Female, age 91, both hemispheres 46.4
2198 Male, age 80, both hemispheres 45.4
2568 Male, age 61, both hemispheres 39.6
2491 Male, age 75, both hemispheres 35.1
2292 Female, age 85, both hemispheres 29.0
1956 Male, age 74, unknown 24.7
2196 Female, age 79, unknown 21.8
2392 Female, age 94, both hemispheres 17.4
Globus pallidus, externus
nTPM: 0.8
2646 Male, age 61, right hemisphere 2.6
2567 Female, age 72, unknown 1.3
1996 Male, age 80, right hemisphere 0.0
2395 Male, age 75, both hemispheres 0.0
2772 Female, age 79, unknown 0.0
Globus pallidus, internus
nTPM: 1.0
2483 Female, age 94, right hemisphere 5.6
1818 Male, age 74, unknown 0.7
2287 Male, age 75, right hemisphere 0.6
2037 Male, age 80, right hemisphere 0.0
2111 Female, age 85, right hemisphere 0.0
2566 Female, age 72, unknown 0.0
2778 Female, age 91, both hemispheres 0.0
Nucleus accumbens
nTPM: 6.4
2286 Male, age 75, left hemisphere 16.6
1783 Male, age 74, unknown 11.6
1806 Female, age 85, left hemisphere 10.7
1856 Female, age 91, right hemisphere 4.3
2824 Male, age 61, right hemisphere 3.4
2698 Female, age 72, unknown 3.3
2391 Female, age 94, left hemisphere 1.2
2732 Male, age 80, right hemisphere 0.0
Nucleus basalis of Meynert
nTPM: 4.1
2484 Female, age 94, left hemisphere 9.7
2569 Male, age 61, both hemispheres 3.0
2821 Male, age 75, both hemispheres 3.0
2393 Male, age 80, right hemisphere 0.5
Nucleus of the diagonal band
nTPM: 24.9
2195 Female, age 85, both hemispheres 36.9
2775 Male, age 80, right hemisphere 31.0
2029 Male, age 61, right hemisphere 23.1
1812 Female, age 91, both hemispheres 21.0
1979 Male, age 74, unknown 12.3
Olfactory tubercle
nTPM: 28.3
2487 Female, age 94, left hemisphere 32.6
1998 Female, age 91, both hemispheres 29.2
2856 Male, age 75, right hemisphere 28.1
1846 Male, age 80, right hemisphere 23.4
Putamen
nTPM: 8.5
2647 Male, age 75, left hemisphere 15.3
2489 Female, age 72, unknown 10.9
2466 Female, age 79, unknown 10.2
1829 Male, age 74, unknown 7.6
2482 Female, age 94, left hemisphere 5.7
1838 Male, age 80, right hemisphere 5.6
1937 Female, age 91, right hemisphere 4.1
Septal nuclei
nTPM: 20.9
1960 Male, age 74, unknown 45.2
2059 Female, age 85, both hemispheres 31.0
2629 Female, age 94, right hemisphere 22.5
2031 Female, age 72, unknown 21.1
2009 Female, age 91, both hemispheres 17.7
2394 Male, age 61, left hemisphere 4.9
2199 Male, age 80, right hemisphere 3.7

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 48.3
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 48.3
Samples: 246

Max nTPM: 119.5
Min nTPM: 15.1
Std nTPM: 14.2
Median nTPM: 48.1
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 119.5
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 105.2
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 98.5
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 93.6
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 77.1
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 74.5
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 73.3
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 71.5
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 70.9
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 70.8
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 70.4
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 46.9
Samples: 246

Max nTPM: 126.0
Min nTPM: 10.9
Std nTPM: 15.7
Median nTPM: 45.4
GTEX-1LB8K-0011-R6a-SM-EXURT 50-59 years, male 126.0
GTEX-1A8G6-0011-R6b-SM-7P8PE 60-69 years, male 104.3
GTEX-131XW-0011-R6b-SM-5K7XY 50-59 years, female 97.6
GTEX-12584-0011-R6a-SM-5NQ7C 40-49 years, male 92.1
GTEX-145MI-0011-R6a-SM-5PNZA 60-69 years, female 85.7
GTEX-13JVG-0011-R6a-SM-5MR3E 60-69 years, male 83.4
GTEX-1H4P4-0011-R6a-SM-ARZLR 50-59 years, male 82.9
GTEX-X261-0011-R6B-SM-4E3J8 50-59 years, male 81.9
GTEX-14753-0011-R6b-SM-5S2UD 60-69 years, male 78.1
GTEX-1JJEA-0011-R6a-SM-EXUS1 60-69 years, male 76.1
GTEX-1RLM8-0011-R6a-SM-EYYXS 50-59 years, male 75.9
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Brain - Putamen (basal ganglia)
Average nTPM: 45.1
Samples: 205

Max nTPM: 80.7
Min nTPM: 11.7
Std nTPM: 12.1
Median nTPM: 44.1
GTEX-1IKOH-0011-R7b-SM-CKZPH 60-69 years, female 80.7
GTEX-X261-0011-R7A-SM-4E3JJ 50-59 years, male 78.0
GTEX-1R46S-0011-R7b-SM-EXUTH 60-69 years, female 77.1
GTEX-13OVL-0011-R7a-SM-5P9GW 50-59 years, male 77.0
GTEX-1HCVE-0011-R7b-SM-A9G1I 50-59 years, male 72.6
GTEX-1E1VI-0011-R7b-SM-9QEGR 50-59 years, male 71.1
GTEX-12ZZW-0011-R7a-SM-5DUWC 50-59 years, male 65.8
GTEX-12ZZX-0011-R7b-SM-5DUVV 40-49 years, female 65.3
GTEX-13JVG-0011-R7b-SM-5MR3Q 60-69 years, male 64.8
GTEX-13OW5-0011-R7a-SM-5O9C9 60-69 years, male 64.2
GTEX-ZDXO-0011-R7a-SM-4WWCU 60-69 years, male 63.9
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 107.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 62.4
FF:10164-103B2 76 years, female 62.4
Globus pallidus
Scaled Tags Per Million: 29.7
FF:10175-103C4 60 years, female 32.3
FF:10161-103A8 76 years, female 27.1
Nucleus accumbens
Scaled Tags Per Million: 107.8
FF:10037-101F1 23-56 years, mixed 107.8
Putamen
Scaled Tags Per Million: 88.6
FF:10176-103C5 60 years, female 88.6

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 69.3
Pig sample Sample description nTPM
Caudate
nTPM: 69.3
Samples: 4

Max nTPM: 87.3
Min nTPM: 58.9
Sample A Female 58.9
Sample B Female 63.9
Sample C Male 87.3
Sample D Male 67.1
Putamen
nTPM: 51.6
Samples: 4

Max nTPM: 67.5
Min nTPM: 25.4
Sample A Female 25.4
Sample B Female 46.8
Sample C Male 67.5
Sample D Male 66.5
Septum
nTPM: 31.7
Samples: 4

Max nTPM: 42.9
Min nTPM: 19.5
Sample A Female 42.9
Sample B Female 41.8
Sample C Male 22.6
Sample D Male 19.5
Ventral pallidum
nTPM: 45.1
Samples: 4

Max nTPM: 58.9
Min nTPM: 33.7
Sample A Female 58.9
Sample B Female 39.2
Sample C Male 33.7
Sample D Male 48.7

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 170.0
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 170.0
Samples: 4

Max nTPM: 190.6
Min nTPM: 145.2
Sample A Male 172.0
Sample B Male 190.6
Sample C Female 145.2
Sample D Female 172.1
Septum
nTPM: 126.2
Samples: 4

Max nTPM: 141.0
Min nTPM: 115.4
Sample A Male 123.1
Sample B Male 141.0
Sample C Female 125.2
Sample D Female 115.4
Ventral forebrain
nTPM: 147.5
Samples: 4

Max nTPM: 157.4
Min nTPM: 128.1
Sample A Male 153.9
Sample B Male 128.1
Sample C Female 157.4
Sample D Female 150.7

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 20.8
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 20.8
68522466 Antisense, RP_050118_02_B03, Mouse strain C57BL/6J (56 days, male) 22.0
71836872 Antisense, RP_051017_02_E02, Mouse strain C57BL/6J (56 days, male) 19.7
Pallidum
Expression energy: 14.1
68522466 Antisense, RP_050118_02_B03, Mouse strain C57BL/6J (56 days, male) 17.6
71836872 Antisense, RP_051017_02_E02, Mouse strain C57BL/6J (56 days, male) 10.7

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.