BASAL GANGLIA - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:43.0 nTPM
HPA:43.0 nTPM
GTEx:27.5 nTPM
FANTOM5:35.6 Scaled Tags Per Million
Mouse:10.0 nTPM
Allen mouse:0.0 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 43.0
Sample id Sample description nTPM
Caudate nucleus
nTPM: 41.6
2481 Female, age 94, left hemisphere 44.5
1857 Female, age 85, left hemisphere 41.9
1854 Male, age 80, left hemisphere 41.8
2288 Male, age 75, left hemisphere 41.5
2290 Female, age 72, unknown 41.5
2846 Female, age 79, unknown 41.2
1781 Male, age 74, unknown 40.6
2289 Male, age 61, right hemisphere 40.0
Claustrum
nTPM: 40.0
1956 Male, age 74, unknown 41.6
2198 Male, age 80, both hemispheres 41.3
2196 Female, age 79, unknown 40.7
2491 Male, age 75, both hemispheres 40.4
2392 Female, age 94, both hemispheres 40.3
2292 Female, age 85, both hemispheres 39.4
2284 Female, age 91, both hemispheres 39.1
2568 Male, age 61, both hemispheres 38.8
2645 Female, age 72, unknown 38.7
Globus pallidus, externus
nTPM: 43.0
2772 Female, age 79, unknown 45.0
1996 Male, age 80, right hemisphere 44.3
2395 Male, age 75, both hemispheres 42.8
2646 Male, age 61, right hemisphere 42.5
2567 Female, age 72, unknown 40.5
Globus pallidus, internus
nTPM: 42.7
2483 Female, age 94, right hemisphere 44.7
2287 Male, age 75, right hemisphere 44.0
1818 Male, age 74, unknown 43.9
2778 Female, age 91, both hemispheres 43.3
2037 Male, age 80, right hemisphere 42.4
2566 Female, age 72, unknown 40.6
2111 Female, age 85, right hemisphere 40.2
Nucleus accumbens
nTPM: 41.6
2286 Male, age 75, left hemisphere 43.0
2391 Female, age 94, left hemisphere 42.4
1856 Female, age 91, right hemisphere 42.2
1806 Female, age 85, left hemisphere 41.7
2698 Female, age 72, unknown 41.6
1783 Male, age 74, unknown 40.8
2732 Male, age 80, right hemisphere 40.5
2824 Male, age 61, right hemisphere 40.5
Nucleus basalis of Meynert
nTPM: 41.5
2569 Male, age 61, both hemispheres 42.8
2484 Female, age 94, left hemisphere 41.4
2393 Male, age 80, right hemisphere 40.9
2821 Male, age 75, both hemispheres 40.7
Nucleus of the diagonal band
nTPM: 41.0
1812 Female, age 91, both hemispheres 42.4
2775 Male, age 80, right hemisphere 41.3
2029 Male, age 61, right hemisphere 40.7
1979 Male, age 74, unknown 40.4
2195 Female, age 85, both hemispheres 40.3
Olfactory tubercle
nTPM: 41.1
2856 Male, age 75, right hemisphere 41.5
1846 Male, age 80, right hemisphere 41.3
1998 Female, age 91, both hemispheres 41.2
2487 Female, age 94, left hemisphere 40.3
Putamen
nTPM: 41.1
2482 Female, age 94, left hemisphere 42.8
1937 Female, age 91, right hemisphere 41.5
1838 Male, age 80, right hemisphere 40.9
2647 Male, age 75, left hemisphere 40.9
1829 Male, age 74, unknown 40.7
2466 Female, age 79, unknown 40.7
2489 Female, age 72, unknown 40.1
Septal nuclei
nTPM: 41.2
2031 Female, age 72, unknown 43.2
1960 Male, age 74, unknown 42.1
2629 Female, age 94, right hemisphere 41.3
2009 Female, age 91, both hemispheres 40.9
2199 Male, age 80, right hemisphere 40.6
2059 Female, age 85, both hemispheres 40.2
2394 Male, age 61, left hemisphere 39.8

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 27.5
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 25.3
Samples: 246

Max nTPM: 52.8
Min nTPM: 15.7
Std nTPM: 6.1
Median nTPM: 24.1
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 52.8
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 48.4
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 47.8
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 47.8
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 46.1
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 41.9
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 40.8
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 39.9
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 39.4
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 38.1
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 37.7
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 25.6
Samples: 246

Max nTPM: 61.6
Min nTPM: 14.2
Std nTPM: 6.9
Median nTPM: 24.0
GTEX-147F4-0011-R6b-SM-5S2UP 50-59 years, male 61.6
GTEX-1RLM8-0011-R6a-SM-EYYXS 50-59 years, male 52.7
GTEX-14753-0011-R6b-SM-5S2UD 60-69 years, male 50.5
GTEX-X261-0011-R6B-SM-4E3J8 50-59 years, male 49.0
GTEX-1LC47-0011-R6b-SM-EZ6MI 60-69 years, male 45.6
GTEX-1H3VE-0011-R6b-SM-A9G1M 40-49 years, male 44.1
GTEX-1F75B-0011-R6a-SM-ARZMI 50-59 years, male 43.6
GTEX-ZV68-0011-R6a-SM-51MSR 50-59 years, female 41.9
GTEX-16XZZ-0011-R6a-SM-7IGNE 60-69 years, male 41.3
GTEX-1EKGG-0011-R6a-SM-CL538 60-69 years, male 41.3
GTEX-11DYG-0011-R6a-SM-DO936 60-69 years, male 39.5
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Brain - Putamen (basal ganglia)
Average nTPM: 27.5
Samples: 205

Max nTPM: 64.2
Min nTPM: 16.5
Std nTPM: 6.8
Median nTPM: 26.1
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 64.2
GTEX-1H3VE-0011-R7b-SM-CE6S9 40-49 years, male 49.6
GTEX-1LVA9-0011-R7a-SM-EYYWG 50-59 years, male 49.6
GTEX-12WSA-0011-R7b-SM-5GU5U 60-69 years, male 48.1
GTEX-14E7W-0011-R7b-SM-5ZZV4 70-79 years, male 45.2
GTEX-ZV68-0011-R7a-SM-51MT4 50-59 years, female 44.8
GTEX-X261-0011-R7A-SM-4E3JJ 50-59 years, male 41.8
GTEX-17MF6-0011-R7b-SM-7LG6J 40-49 years, male 41.7
GTEX-1I1GS-0011-R7a-SM-CM2T6 60-69 years, male 40.9
GTEX-1F75B-0011-R7a-SM-ARU84 50-59 years, male 39.5
GTEX-ZE7O-0011-R7a-SM-57WCU 50-59 years, female 39.3
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 35.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 28.9
FF:10164-103B2 76 years, female 28.9
Globus pallidus
Scaled Tags Per Million: 35.6
FF:10175-103C4 60 years, female 36.3
FF:10161-103A8 76 years, female 35.0
Nucleus accumbens
Scaled Tags Per Million: 30.4
FF:10037-101F1 23-56 years, mixed 30.4
Putamen
Scaled Tags Per Million: 30.1
FF:10176-103C5 60 years, female 30.1

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 10.0
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 9.6
Samples: 4

Max nTPM: 10.2
Min nTPM: 8.6
Sample A Male 9.7
Sample B Male 9.7
Sample C Female 10.2
Sample D Female 8.6
Septum
nTPM: 9.7
Samples: 4

Max nTPM: 10.1
Min nTPM: 9.2
Sample A Male 9.6
Sample B Male 9.2
Sample C Female 10.1
Sample D Female 9.7
Ventral forebrain
nTPM: 10.0
Samples: 4

Max nTPM: 10.5
Min nTPM: 8.8
Sample A Male 10.2
Sample B Male 8.8
Sample C Female 10.5
Sample D Female 10.3

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.0
74822938 Antisense, RP_060321_01_A11, Mouse strain C57BL/6J (56 days, male) 0.0
Pallidum
Expression energy: 0.0
74822938 Antisense, RP_060321_01_A11, Mouse strain C57BL/6J (56 days, male) 0.0

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The Human Protein Atlas

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