BASAL GANGLIA - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:53.2 nTPM
HPA:53.2 nTPM
GTEx:62.3 nTPM
FANTOM5:141.1 Scaled Tags Per Million
Pig:79.2 nTPM
Mouse:45.3 nTPM
Allen mouse:1.3 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 53.2
Sample id Sample description nTPM
Caudate nucleus
nTPM: 50.6
2846 Female, age 79, unknown 80.0
2290 Female, age 72, unknown 78.3
1857 Female, age 85, left hemisphere 61.3
1854 Male, age 80, left hemisphere 54.3
1781 Male, age 74, unknown 51.7
2289 Male, age 61, right hemisphere 40.3
2481 Female, age 94, left hemisphere 22.9
2288 Male, age 75, left hemisphere 16.3
Claustrum
nTPM: 6.9
2196 Female, age 79, unknown 14.3
2392 Female, age 94, both hemispheres 8.3
2198 Male, age 80, both hemispheres 8.0
2568 Male, age 61, both hemispheres 6.6
2284 Female, age 91, both hemispheres 5.8
2491 Male, age 75, both hemispheres 5.2
1956 Male, age 74, unknown 4.8
2292 Female, age 85, both hemispheres 4.6
2645 Female, age 72, unknown 4.2
Globus pallidus, externus
nTPM: 6.1
2395 Male, age 75, both hemispheres 7.6
2646 Male, age 61, right hemisphere 7.2
1996 Male, age 80, right hemisphere 6.3
2567 Female, age 72, unknown 5.2
2772 Female, age 79, unknown 4.4
Globus pallidus, internus
nTPM: 7.3
2483 Female, age 94, right hemisphere 14.9
2111 Female, age 85, right hemisphere 6.7
2287 Male, age 75, right hemisphere 6.6
2778 Female, age 91, both hemispheres 6.6
2037 Male, age 80, right hemisphere 6.4
2566 Female, age 72, unknown 5.1
1818 Male, age 74, unknown 4.7
Nucleus accumbens
nTPM: 33.1
1783 Male, age 74, unknown 70.6
1806 Female, age 85, left hemisphere 46.9
2824 Male, age 61, right hemisphere 40.9
2698 Female, age 72, unknown 35.0
1856 Female, age 91, right hemisphere 25.9
2391 Female, age 94, left hemisphere 17.0
2286 Male, age 75, left hemisphere 15.4
2732 Male, age 80, right hemisphere 13.2
Nucleus basalis of Meynert
nTPM: 28.6
2393 Male, age 80, right hemisphere 51.2
2484 Female, age 94, left hemisphere 40.8
2821 Male, age 75, both hemispheres 12.9
2569 Male, age 61, both hemispheres 9.7
Nucleus of the diagonal band
nTPM: 5.3
1812 Female, age 91, both hemispheres 6.4
2029 Male, age 61, right hemisphere 5.3
2195 Female, age 85, both hemispheres 5.3
1979 Male, age 74, unknown 4.9
2775 Male, age 80, right hemisphere 4.7
Olfactory tubercle
nTPM: 6.6
1846 Male, age 80, right hemisphere 7.7
1998 Female, age 91, both hemispheres 7.5
2856 Male, age 75, right hemisphere 5.9
2487 Female, age 94, left hemisphere 5.2
Putamen
nTPM: 53.2
1829 Male, age 74, unknown 105.4
2466 Female, age 79, unknown 92.3
1838 Male, age 80, right hemisphere 60.0
2489 Female, age 72, unknown 46.2
1937 Female, age 91, right hemisphere 28.9
2482 Female, age 94, left hemisphere 26.6
2647 Male, age 75, left hemisphere 12.6
Septal nuclei
nTPM: 5.3
2394 Male, age 61, left hemisphere 8.1
2009 Female, age 91, both hemispheres 5.2
2059 Female, age 85, both hemispheres 5.2
2199 Male, age 80, right hemisphere 5.2
2629 Female, age 94, right hemisphere 5.2
2031 Female, age 72, unknown 4.7
1960 Male, age 74, unknown 3.5

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 62.3
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 62.3
Samples: 246

Max nTPM: 311.7
Min nTPM: 5.2
Std nTPM: 45.7
Median nTPM: 50.6
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 311.7
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 222.7
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 178.8
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 177.0
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 175.4
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 166.5
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 166.4
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 166.2
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 161.5
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 161.1
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 154.1
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 44.3
Samples: 246

Max nTPM: 136.5
Min nTPM: 3.8
Std nTPM: 29.3
Median nTPM: 39.0
GTEX-16YQH-0011-R6b-SM-7938T 30-39 years, male 136.5
GTEX-1F7RK-0011-R6b-SM-ARZMG 20-29 years, female 135.1
GTEX-WWYW-0011-R6A-SM-3NB3G 50-59 years, female 134.9
GTEX-13X6J-0011-R6a-SM-5PNUB 50-59 years, male 126.4
GTEX-T6MN-0011-R6A-SM-32QP8 50-59 years, male 124.1
GTEX-NL3H-0011-R6a-SM-2I3G8 60-69 years, male 119.9
GTEX-1HT8W-0011-R6a-SM-CM2SY 30-39 years, male 117.3
GTEX-13OVL-0011-R6a-SM-5L3G4 50-59 years, male 112.6
GTEX-14JIY-0011-R6b-SM-68714 60-69 years, male 111.8
GTEX-1I1GV-0011-R6b-SM-ARU6Q 60-69 years, male 110.0
GTEX-1I1GR-0011-R6a-SM-CMKHI 60-69 years, male 109.7
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Brain - Putamen (basal ganglia)
Average nTPM: 56.8
Samples: 205

Max nTPM: 215.4
Min nTPM: 7.4
Std nTPM: 38.3
Median nTPM: 48.7
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 215.4
GTEX-1HT8W-0011-R7b-SM-CMKH8 30-39 years, male 158.4
GTEX-14C5O-0011-R7b-SM-5YYAH 60-69 years, male 157.9
GTEX-WHSE-0011-R7A-SM-3P5YZ 20-29 years, male 154.1
GTEX-12WSI-0011-R7b-SM-5GU78 50-59 years, male 144.1
GTEX-1AX9I-0011-R7b-SM-7P8Q3 60-69 years, male 142.8
GTEX-11PRG-0011-R7a-SM-DNZZT 50-59 years, male 142.7
GTEX-RNOR-0011-R7A-SM-2TF4V 50-59 years, female 142.1
GTEX-S7SE-0011-R7A-SM-2XCDI 50-59 years, male 138.5
GTEX-1C6WA-0011-R7b-SM-7P8S8 60-69 years, male 137.8
GTEX-1313W-0011-R7b-SM-5DUWL 50-59 years, female 130.4
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 141.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 98.8
FF:10164-103B2 76 years, female 98.8
Globus pallidus
Scaled Tags Per Million: 114.9
FF:10175-103C4 60 years, female 200.4
FF:10161-103A8 76 years, female 29.4
Nucleus accumbens
Scaled Tags Per Million: 131.6
FF:10037-101F1 23-56 years, mixed 131.6
Putamen
Scaled Tags Per Million: 141.1
FF:10176-103C5 60 years, female 141.1

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 79.2
Pig sample Sample description nTPM
Caudate
nTPM: 63.3
Samples: 4

Max nTPM: 82.5
Min nTPM: 52.1
Sample A Female 52.1
Sample B Female 54.7
Sample C Male 82.5
Sample D Male 63.7
Putamen
nTPM: 79.2
Samples: 4

Max nTPM: 143.5
Min nTPM: 29.5
Sample A Female 29.5
Sample B Female 73.7
Sample C Male 143.5
Sample D Male 70.1
Septum
nTPM: 18.2
Samples: 4

Max nTPM: 35.8
Min nTPM: 2.5
Sample A Female 35.8
Sample B Female 29.4
Sample C Male 2.5
Sample D Male 4.9
Ventral pallidum
nTPM: 34.7
Samples: 4

Max nTPM: 55.7
Min nTPM: 9.3
Sample A Female 55.7
Sample B Female 33.7
Sample C Male 9.3
Sample D Male 40.0

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 45.3
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 45.3
Samples: 4

Max nTPM: 50.8
Min nTPM: 40.1
Sample A Male 50.8
Sample B Male 47.9
Sample C Female 42.2
Sample D Female 40.1
Septum
nTPM: 4.6
Samples: 4

Max nTPM: 6.6
Min nTPM: 2.6
Sample A Male 6.6
Sample B Male 2.6
Sample C Female 4.8
Sample D Female 4.2
Ventral forebrain
nTPM: 20.0
Samples: 4

Max nTPM: 21.2
Min nTPM: 17.6
Sample A Male 21.2
Sample B Male 17.6
Sample C Female 20.4
Sample D Female 20.9

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 1.3
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 1.3
79750675 Antisense, RP_071204_02_D12, Mouse strain C57BL/6J (56 days, male) 2.1
649 Antisense, RP_Baylor_102894, Mouse strain C57BL/6J (56 days, male) 0.6
Pallidum
Expression energy: 0.3
79750675 Antisense, RP_071204_02_D12, Mouse strain C57BL/6J (56 days, male) 0.5
649 Antisense, RP_Baylor_102894, Mouse strain C57BL/6J (56 days, male) 0.1

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The Human Protein Atlas

The Human Protein Atlas project is funded
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