MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:167.6 nTPM
HPA:167.6 nTPM
GTEx:105.7 nTPM
FANTOM5:195.2 Scaled Tags Per Million
Pig:21.0 nTPM
Mouse:6.4 nTPM
Allen mouse:0.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 167.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 152.1
2666 Male, age 74, left hemisphere 171.1
2019 Male, age 18, unknown 165.7
2828 Female, age 72, unknown 158.7
1870 Female, age 42, unknown 158.6
1830 Male, age 51, unknown 156.5
1833 Male, age 53, unknown 153.8
2219 Male, age 76, both hemispheres 152.0
2411 Female, age 72, unknown 151.5
1827 Male, age 72, unknown 136.1
2586 Male, age 75, left hemisphere 116.6
Dorsal raphe nucleus
nTPM: 153.3
2750 Male, age 76, both hemispheres 158.8
1828 Male, age 53, unknown 156.7
2298 Female, age 72, unknown 154.8
2016 Female, age 72, unknown 151.8
2047 Male, age 72, unknown 144.3
Inferior colliculus
nTPM: 152.3
2097 Female, age 72, unknown 161.5
1890 Male, age 53, unknown 160.5
1848 Female, age 42, unknown 150.1
2849 Male, age 72, unknown 137.1
Median raphe nucleus
nTPM: 141.6
2220 Male, age 76, midline 141.6
Pedunculopontine tegmental nucleus
nTPM: 164.2
2338 Male, age 61, both hemispheres 197.0
2334 Male, age 80, both hemispheres 158.3
1921 Female, age 85, both hemispheres 137.3
Periaquaductal grey, anterior
nTPM: 146.4
2502 Female, age 75, unknown 155.3
1947 Male, age 18, unknown 147.3
1795 Male, age 51, unknown 136.7
Periaquaductal grey, dorsal
nTPM: 143.9
1831 Male, age 72, unknown 157.1
2464 Female, age 72, unknown 148.9
2850 Male, age 76, both hemispheres 135.2
1840 Male, age 53, unknown 134.5
Periaquaductal grey, lateral
nTPM: 146.1
2272 Male, age 74, both hemispheres 152.5
2053 Male, age 18, unknown 146.9
2140 Male, age 76, both hemispheres 138.8
Pretectal area
nTPM: 145.7
1817 Female, age 42, unknown 168.4
2007 Male, age 72, unknown 153.7
2316 Male, age 76, right hemisphere 152.2
1815 Male, age 53, unknown 151.5
2224 Female, age 72, unknown 145.6
1944 Female, age 72, unknown 144.3
2667 Female, age 75, unknown 144.2
2273 Male, age 74, both hemispheres 142.4
2825 Male, age 18, unknown 138.1
1816 Male, age 51, unknown 136.2
2407 Male, age 75, both hemispheres 125.5
Red nucleus
nTPM: 167.6
1954 Female, age 42, unknown 193.3
2823 Male, age 76, right hemisphere 178.4
1821 Female, age 72, unknown 178.0
1904 Male, age 53, unknown 177.5
1865 Male, age 51, unknown 177.4
2503 Female, age 72, unknown 174.2
2769 Male, age 72, unknown 171.0
2227 Male, age 72, unknown 168.1
2785 Male, age 18, unknown 160.3
2588 Male, age 74, left hemisphere 154.7
2725 Female, age 75, unknown 150.2
2584 Male, age 75, left hemisphere 127.6
Substantia nigra
nTPM: 165.7
2665 Male, age 74, both hemispheres 214.7
2409 Female, age 72, unknown 174.6
2699 Male, age 18, unknown 171.1
2241 Male, age 72, unknown 169.2
1851 Male, age 51, unknown 166.8
2590 Female, age 75, unknown 165.8
1916 Female, age 42, unknown 156.0
1889 Female, age 72, unknown 149.1
1941 Male, age 53, unknown 149.0
2583 Male, age 75, right hemisphere 140.7
Superior colliculus
nTPM: 147.4
2587 Male, age 74, left hemisphere 172.1
1913 Female, age 42, unknown 161.8
2087 Female, age 72, unknown 154.4
1895 Male, age 76, right hemisphere 151.3
1995 Male, age 72, unknown 151.2
1839 Male, age 51, unknown 148.1
2668 Female, age 75, unknown 147.9
2261 Male, age 18, unknown 136.0
1796 Male, age 53, unknown 133.6
2664 Male, age 75, both hemispheres 117.9
Ventral tegmental area
nTPM: 159.9
2410 Female, age 72, unknown 168.4
2021 Male, age 53, unknown 167.3
2218 Male, age 76, both hemispheres 160.1
1942 Male, age 51, unknown 159.3
2223 Female, age 72, unknown 154.7
1915 Female, age 42, unknown 149.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 105.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 105.7
Samples: 139

Max nTPM: 252.4
Min nTPM: 23.5
Std nTPM: 45.9
Median nTPM: 99.9
GTEX-1IL2U-0011-R2a-SM-ARU6V 60-69 years, male 252.4
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 247.7
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 243.2
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 240.3
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 227.8
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 224.6
GTEX-OHPN-0011-R2A-SM-2I5FB 60-69 years, female 222.2
GTEX-NPJ8-0011-R2a-SM-2TC6M 40-49 years, male 216.0
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 194.5
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 182.7
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 177.0
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 195.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 195.2
FF:10158-103A5 76 years, female 195.2

MIDBRAIN - Pig RNA-seqi
Average nTPM 21.0
Pig sample Sample description nTPM
Midbrain
nTPM: 15.5
Samples: 4

Max nTPM: 30.0
Min nTPM: 6.3
Sample A Female 30.0
Sample B Female 19.1
Sample C Male 6.3
Sample D Male 6.5
Periaqueductal gray
nTPM: 20.1
Samples: 3

Max nTPM: 26.3
Min nTPM: 15.2
Sample B Female 18.9
Sample C Male 26.3
Sample D Male 15.2
Substantia nigra
nTPM: 21.0
Samples: 4

Max nTPM: 23.9
Min nTPM: 18.3
Sample A Female 23.9
Sample B Female 23.4
Sample C Male 18.3
Sample D Male 18.3
Superior colliculi
nTPM: 10.0
Samples: 4

Max nTPM: 11.8
Min nTPM: 8.5
Sample A Female 11.8
Sample B Female 8.5
Sample C Male 9.0
Sample D Male 10.6

MIDBRAIN - Mouse RNA-seqi
Average nTPM 6.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 6.4
Samples: 4

Max nTPM: 7.4
Min nTPM: 5.8
Sample A Male 6.5
Sample B Male 5.8
Sample C Female 7.4
Sample D Female 6.0

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.1
100146086 Antisense, RP_110519_03_F07, Mouse strain C57BL/6J (56 days, male) 0.1

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.