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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:196.2 nTPM
HPA:196.2 nTPM
GTEx:99.2 nTPM
FANTOM5:187.1 Scaled Tags Per Million
Pig:19.7 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max nTPM 196.2
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 153.7
1981 Female, age 72, midline 167.9
2048 Male, age 55, midline 156.9
2565 Male, age 75, midline 154.2
2194 Female, age 79, both hemispheres 147.9
2816 Male, age 47, midline 141.7
Cervical spinal cord, dorsal horn
nTPM: 159.2
2173 Female, age 72, unknown 182.0
2069 Male, age 47, both hemispheres 172.3
1877 Male, age 55, unknown 163.1
2721 Male, age 90, both hemispheres 153.3
2297 Male, age 75, both hemispheres 149.7
2296 Male, age 66, both hemispheres 134.8
Cervical spinal cord, ventral horn
nTPM: 196.2
2809 Male, age 90, both hemispheres 258.3
2480 Male, age 75, both hemispheres 206.1
2098 Female, age 72, unknown 197.0
2295 Male, age 66, both hemispheres 190.5
2068 Male, age 55, unknown 177.9
2820 Female, age 79, both hemispheres 147.6

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 99.2
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 99.2
Samples: 159

Max nTPM: 272.4
Min nTPM: 18.5
Std nTPM: 47.9
Median nTPM: 91.1
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 272.4
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 238.8
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 222.6
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 210.6
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 207.3
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 204.8
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 202.0
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 187.2
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 184.4
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 178.5
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 177.5
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 175.3
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 170.8
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 167.9
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 167.2
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 165.7
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 163.1
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 161.3
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 161.1
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 161.0
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 160.6
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 150.5
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 150.4
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 149.2
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 148.2
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 146.2
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 145.6
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 145.5
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 145.3
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 141.7
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 140.2
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 139.9
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 138.7
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 137.7
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 136.0
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 133.0
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 132.0
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 131.5
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 131.2
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 130.6
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 129.0
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 127.9
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 126.1
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 123.4
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 123.4
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 123.2
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 123.1
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 121.8
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 118.3
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 117.7
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 117.0
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 116.9
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 116.3
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 114.9
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 114.3
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 113.1
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 112.6
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 112.0
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 111.9
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 110.1
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 109.2
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 107.6
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 100.4
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 99.8
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 98.8
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 98.6
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 98.1
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 97.5
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 96.0
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 95.3
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 94.6
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 94.1
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 94.1
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 93.4
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 93.0
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 92.0
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 92.0
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 91.7
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 91.3
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 91.1
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 90.4
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 90.2
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 88.6
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 87.7
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 87.1
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 87.0
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 86.7
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 86.5
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 86.0
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 85.5
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 85.1
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 85.1
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 84.1
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 83.4
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 83.0
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 82.9
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 82.6
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 80.9
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 80.4
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 77.7
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 76.7
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 74.4
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 74.1
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 74.1
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 73.7
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 73.1
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 70.8
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 70.5
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 70.1
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 69.1
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 68.0
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 67.5
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 67.4
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 67.1
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 66.7
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 65.8
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 65.3
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 64.9
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 64.7
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 64.4
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 64.0
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 63.5
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 63.3
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 62.1
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 62.0
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 62.0
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 59.1
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 58.4
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 58.2
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 58.1
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 55.6
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 54.7
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 54.2
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 52.5
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 52.3
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 51.1
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 50.8
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 46.9
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 46.3
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 45.0
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 44.6
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 44.4
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 44.1
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 41.7
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 41.2
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 38.4
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 38.2
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 37.8
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 35.7
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 35.2
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 34.4
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 33.9
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 33.2
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 32.5
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 29.0
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 28.2
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 19.6
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 19.1
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 18.5
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 187.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 187.1
FF:10159-103A6 76 years, female 269.3
FF:10181-103D1 60 years, female 104.9

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 19.7
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 18.4
Samples: 4

Max nTPM: 26.0
Min nTPM: 13.6
Sample A Female 13.6
Sample B Female 26.0
Sample C Male 17.6
Sample D Male 16.3
Ventral spinal cord
nTPM: 19.8
Samples: 4

Max nTPM: 22.2
Min nTPM: 16.2
Sample A Female 16.2
Sample B Female 22.2
Sample C Male 20.9
Sample D Male 19.7

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