MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:77.0 nTPM
HPA:77.0 nTPM
GTEx:137.2 nTPM
FANTOM5:181.6 Scaled Tags Per Million
Pig:18.1 nTPM
Mouse:10.0 nTPM
Allen mouse:0.1 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 77.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 65.4
2586 Male, age 75, left hemisphere 78.1
2828 Female, age 72, unknown 71.2
1870 Female, age 42, unknown 68.5
2666 Male, age 74, left hemisphere 65.7
1833 Male, age 53, unknown 63.9
2411 Female, age 72, unknown 63.8
1827 Male, age 72, unknown 63.4
1830 Male, age 51, unknown 61.9
2219 Male, age 76, both hemispheres 61.1
2019 Male, age 18, unknown 56.7
Dorsal raphe nucleus
nTPM: 70.2
2047 Male, age 72, unknown 74.2
1828 Male, age 53, unknown 72.6
2016 Female, age 72, unknown 69.8
2750 Male, age 76, both hemispheres 67.9
2298 Female, age 72, unknown 66.5
Inferior colliculus
nTPM: 62.9
2849 Male, age 72, unknown 67.7
1890 Male, age 53, unknown 62.6
1848 Female, age 42, unknown 60.8
2097 Female, age 72, unknown 60.6
Median raphe nucleus
nTPM: 77.0
2220 Male, age 76, midline 77.0
Pedunculopontine tegmental nucleus
nTPM: 65.9
2334 Male, age 80, both hemispheres 70.2
2338 Male, age 61, both hemispheres 64.4
1921 Female, age 85, both hemispheres 63.0
Periaquaductal grey, anterior
nTPM: 65.7
1795 Male, age 51, unknown 68.6
1947 Male, age 18, unknown 64.2
2502 Female, age 75, unknown 64.2
Periaquaductal grey, dorsal
nTPM: 72.2
2850 Male, age 76, both hemispheres 82.5
1831 Male, age 72, unknown 71.4
1840 Male, age 53, unknown 70.7
2464 Female, age 72, unknown 64.4
Periaquaductal grey, lateral
nTPM: 73.0
2140 Male, age 76, both hemispheres 78.0
2053 Male, age 18, unknown 77.8
2272 Male, age 74, both hemispheres 63.1
Pretectal area
nTPM: 63.8
2825 Male, age 18, unknown 71.8
2667 Female, age 75, unknown 69.8
2224 Female, age 72, unknown 67.3
1944 Female, age 72, unknown 63.8
2273 Male, age 74, both hemispheres 63.8
2316 Male, age 76, right hemisphere 62.6
1815 Male, age 53, unknown 62.2
1817 Female, age 42, unknown 61.5
2407 Male, age 75, both hemispheres 61.4
1816 Male, age 51, unknown 60.4
2007 Male, age 72, unknown 56.9
Red nucleus
nTPM: 67.8
2725 Female, age 75, unknown 76.7
2227 Male, age 72, unknown 70.9
2584 Male, age 75, left hemisphere 70.8
2769 Male, age 72, unknown 69.2
2823 Male, age 76, right hemisphere 68.4
2503 Female, age 72, unknown 68.3
1821 Female, age 72, unknown 68.2
1865 Male, age 51, unknown 67.6
1954 Female, age 42, unknown 67.3
1904 Male, age 53, unknown 66.1
2588 Male, age 74, left hemisphere 62.4
2785 Male, age 18, unknown 57.7
Substantia nigra
nTPM: 68.1
2699 Male, age 18, unknown 92.5
1916 Female, age 42, unknown 71.8
1851 Male, age 51, unknown 69.3
2409 Female, age 72, unknown 68.7
2583 Male, age 75, right hemisphere 67.2
1941 Male, age 53, unknown 64.6
1889 Female, age 72, unknown 63.3
2665 Male, age 74, both hemispheres 63.1
2590 Female, age 75, unknown 60.2
2241 Male, age 72, unknown 60.1
Superior colliculus
nTPM: 63.7
1913 Female, age 42, unknown 73.1
1995 Male, age 72, unknown 68.3
1796 Male, age 53, unknown 64.4
2664 Male, age 75, both hemispheres 63.1
2087 Female, age 72, unknown 62.9
2587 Male, age 74, left hemisphere 62.6
1839 Male, age 51, unknown 62.0
2261 Male, age 18, unknown 60.4
1895 Male, age 76, right hemisphere 60.0
2668 Female, age 75, unknown 59.7
Ventral tegmental area
nTPM: 69.0
1942 Male, age 51, unknown 72.2
2021 Male, age 53, unknown 72.2
2223 Female, age 72, unknown 71.3
2218 Male, age 76, both hemispheres 70.2
1915 Female, age 42, unknown 66.8
2410 Female, age 72, unknown 61.2

MIDBRAIN - GTEx RNA-seqi
Average nTPM 137.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 137.2
Samples: 139

Max nTPM: 427.6
Min nTPM: 24.8
Std nTPM: 86.1
Median nTPM: 114.8
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 427.6
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 422.3
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 412.4
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 411.8
GTEX-XMD1-0011-R2B-SM-4AT5N 60-69 years, male 408.8
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 386.5
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 379.5
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 324.5
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 317.9
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 317.6
GTEX-11PRG-0011-R2a-SM-69LQ5 50-59 years, male 288.4
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 181.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 181.6
FF:10158-103A5 76 years, female 181.6

MIDBRAIN - Pig RNA-seqi
Average nTPM 18.1
Pig sample Sample description nTPM
Midbrain
nTPM: 6.2
Samples: 4

Max nTPM: 8.3
Min nTPM: 3.1
Sample A Female 6.1
Sample B Female 8.3
Sample C Male 7.3
Sample D Male 3.1
Periaqueductal gray
nTPM: 6.1
Samples: 3

Max nTPM: 8.9
Min nTPM: 3.7
Sample B Female 5.6
Sample C Male 8.9
Sample D Male 3.7
Substantia nigra
nTPM: 18.1
Samples: 4

Max nTPM: 27.4
Min nTPM: 4.4
Sample A Female 20.7
Sample B Female 19.9
Sample C Male 27.4
Sample D Male 4.4
Superior colliculi
nTPM: 17.2
Samples: 4

Max nTPM: 38.6
Min nTPM: 3.4
Sample A Female 15.3
Sample B Female 38.6
Sample C Male 11.5
Sample D Male 3.4

MIDBRAIN - Mouse RNA-seqi
Average nTPM 10.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 10.0
Samples: 4

Max nTPM: 12.1
Min nTPM: 8.9
Sample A Male 12.1
Sample B Male 9.8
Sample C Female 8.9
Sample D Female 9.0

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.1
631712 Antisense, RP_040907_01_B01, Mouse strain C57BL/6J (56 days, male) 0.1

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.