BASAL GANGLIA - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:37.3 nTPM
HPA:37.3 nTPM
GTEx:28.6 nTPM
FANTOM5:21.7 Scaled Tags Per Million
Pig:9.3 nTPM
Mouse:76.0 nTPM
Allen mouse:0.4 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 37.3
Sample id Sample description nTPM
Caudate nucleus
nTPM: 31.8
2481 Female, age 94, left hemisphere 32.7
1854 Male, age 80, left hemisphere 32.6
2846 Female, age 79, unknown 32.3
2290 Female, age 72, unknown 32.1
1781 Male, age 74, unknown 31.4
2289 Male, age 61, right hemisphere 31.1
1857 Female, age 85, left hemisphere 31.0
2288 Male, age 75, left hemisphere 31.0
Claustrum
nTPM: 30.5
2645 Female, age 72, unknown 32.1
2292 Female, age 85, both hemispheres 31.9
1956 Male, age 74, unknown 31.1
2196 Female, age 79, unknown 30.6
2198 Male, age 80, both hemispheres 30.3
2568 Male, age 61, both hemispheres 30.2
2284 Female, age 91, both hemispheres 29.6
2392 Female, age 94, both hemispheres 29.5
2491 Male, age 75, both hemispheres 29.5
Globus pallidus, externus
nTPM: 37.3
2567 Female, age 72, unknown 39.9
1996 Male, age 80, right hemisphere 39.0
2772 Female, age 79, unknown 38.4
2646 Male, age 61, right hemisphere 36.1
2395 Male, age 75, both hemispheres 32.9
Globus pallidus, internus
nTPM: 36.8
2037 Male, age 80, right hemisphere 38.2
1818 Male, age 74, unknown 38.1
2111 Female, age 85, right hemisphere 37.8
2483 Female, age 94, right hemisphere 36.8
2566 Female, age 72, unknown 36.8
2778 Female, age 91, both hemispheres 35.1
2287 Male, age 75, right hemisphere 34.9
Nucleus accumbens
nTPM: 31.5
2698 Female, age 72, unknown 32.8
1806 Female, age 85, left hemisphere 32.3
1783 Male, age 74, unknown 31.7
2732 Male, age 80, right hemisphere 31.7
2391 Female, age 94, left hemisphere 31.5
2286 Male, age 75, left hemisphere 31.3
2824 Male, age 61, right hemisphere 31.0
1856 Female, age 91, right hemisphere 29.9
Nucleus basalis of Meynert
nTPM: 32.5
2569 Male, age 61, both hemispheres 36.6
2393 Male, age 80, right hemisphere 31.8
2484 Female, age 94, left hemisphere 31.3
2821 Male, age 75, both hemispheres 30.4
Nucleus of the diagonal band
nTPM: 29.2
2029 Male, age 61, right hemisphere 30.1
1979 Male, age 74, unknown 29.9
1812 Female, age 91, both hemispheres 29.2
2775 Male, age 80, right hemisphere 28.8
2195 Female, age 85, both hemispheres 27.9
Olfactory tubercle
nTPM: 29.3
2856 Male, age 75, right hemisphere 30.7
1846 Male, age 80, right hemisphere 29.7
1998 Female, age 91, both hemispheres 28.4
2487 Female, age 94, left hemisphere 28.3
Putamen
nTPM: 33.1
2647 Male, age 75, left hemisphere 35.5
2489 Female, age 72, unknown 34.4
2482 Female, age 94, left hemisphere 34.0
1829 Male, age 74, unknown 33.0
2466 Female, age 79, unknown 32.2
1838 Male, age 80, right hemisphere 31.3
1937 Female, age 91, right hemisphere 31.3
Septal nuclei
nTPM: 29.5
2199 Male, age 80, right hemisphere 31.4
2394 Male, age 61, left hemisphere 31.4
2059 Female, age 85, both hemispheres 30.2
1960 Male, age 74, unknown 28.8
2629 Female, age 94, right hemisphere 28.3
2031 Female, age 72, unknown 28.2
2009 Female, age 91, both hemispheres 27.8

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 28.6
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 26.3
Samples: 246

Max nTPM: 56.2
Min nTPM: 15.5
Std nTPM: 5.8
Median nTPM: 25.0
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 56.2
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 43.7
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 42.7
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 41.7
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 40.6
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 40.4
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 40.1
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 38.8
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 38.4
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 38.4
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 37.7
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 25.2
Samples: 246

Max nTPM: 57.6
Min nTPM: 14.6
Std nTPM: 7.1
Median nTPM: 23.1
GTEX-1RLM8-0011-R6a-SM-EYYXS 50-59 years, male 57.6
GTEX-1E2YA-0011-R6b-SM-CE6R2 50-59 years, male 54.5
GTEX-1H3VE-0011-R6b-SM-A9G1M 40-49 years, male 48.5
GTEX-16XZZ-0011-R6a-SM-7IGNE 60-69 years, male 48.3
GTEX-1LB8K-0011-R6a-SM-EXURT 50-59 years, male 45.9
GTEX-14PHW-0011-R6b-SM-5YYAR 60-69 years, female 45.4
GTEX-X261-0011-R6B-SM-4E3J8 50-59 years, male 45.3
GTEX-1CB4J-0011-R6b-SM-9WG7B 60-69 years, male 44.4
GTEX-1CB4H-0011-R6b-SM-CKZNK 60-69 years, female 42.4
GTEX-1C64N-0011-R6a-SM-7IGO9 50-59 years, male 40.9
GTEX-1H23P-0011-R6b-SM-A9G1H 60-69 years, male 40.1
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Brain - Putamen (basal ganglia)
Average nTPM: 28.6
Samples: 205

Max nTPM: 47.7
Min nTPM: 16.5
Std nTPM: 6.3
Median nTPM: 27.4
GTEX-1CB4H-0011-R7b-SM-CJI27 60-69 years, female 47.7
GTEX-1R46S-0011-R7b-SM-EXUTH 60-69 years, female 47.1
GTEX-1HCU6-0011-R7b-SM-ARL77 60-69 years, female 45.6
GTEX-1E2YA-0011-R7a-SM-CJI1Z 50-59 years, male 45.1
GTEX-1C64N-0011-R7a-SM-7IGOI 50-59 years, male 45.0
GTEX-ZVT3-0011-R7a-SM-57WCO 60-69 years, female 44.0
GTEX-1IKOH-0011-R7b-SM-CKZPH 60-69 years, female 43.4
GTEX-1H3VE-0011-R7b-SM-CE6S9 40-49 years, male 42.2
GTEX-X261-0011-R7A-SM-4E3JJ 50-59 years, male 42.1
GTEX-1F6I4-0011-R7a-SM-CJI24 60-69 years, male 41.9
GTEX-13N2G-0011-R7a-SM-5MR42 60-69 years, male 40.6
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 21.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 16.0
FF:10164-103B2 76 years, female 16.0
Globus pallidus
Scaled Tags Per Million: 18.5
FF:10161-103A8 76 years, female 21.3
FF:10175-103C4 60 years, female 15.7
Nucleus accumbens
Scaled Tags Per Million: 21.7
FF:10037-101F1 23-56 years, mixed 21.7
Putamen
Scaled Tags Per Million: 12.8
FF:10176-103C5 60 years, female 12.8

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 9.3
Pig sample Sample description nTPM
Caudate
nTPM: 8.4
Samples: 4

Max nTPM: 11.0
Min nTPM: 6.5
Sample A Female 6.5
Sample B Female 8.5
Sample C Male 11.0
Sample D Male 7.7
Putamen
nTPM: 9.4
Samples: 4

Max nTPM: 11.6
Min nTPM: 7.5
Sample A Female 7.5
Sample B Female 8.2
Sample C Male 11.6
Sample D Male 10.1
Septum
nTPM: 6.1
Samples: 4

Max nTPM: 6.8
Min nTPM: 5.3
Sample A Female 6.3
Sample B Female 5.8
Sample C Male 6.8
Sample D Male 5.3
Ventral pallidum
nTPM: 8.0
Samples: 4

Max nTPM: 11.3
Min nTPM: 5.8
Sample A Female 5.8
Sample B Female 7.5
Sample C Male 11.3
Sample D Male 7.2

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 76.0
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 76.0
Samples: 4

Max nTPM: 83.1
Min nTPM: 64.0
Sample A Male 81.6
Sample B Male 64.0
Sample C Female 83.1
Sample D Female 75.3
Septum
nTPM: 48.0
Samples: 4

Max nTPM: 78.0
Min nTPM: 37.3
Sample A Male 38.3
Sample B Male 78.0
Sample C Female 37.3
Sample D Female 38.5
Ventral forebrain
nTPM: 57.1
Samples: 4

Max nTPM: 65.4
Min nTPM: 50.6
Sample A Male 60.5
Sample B Male 51.8
Sample C Female 65.4
Sample D Female 50.6

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.4
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.4
112647750 Antisense, RP_110421_01_A09, Mouse strain C57BL/6J (56 days, male) 0.4
100144164 Antisense, RP_110421_01_A09, Mouse strain C57BL/6J (56 days, male) 0.2
Pallidum
Expression energy: 0.4
112647750 Antisense, RP_110421_01_A09, Mouse strain C57BL/6J (56 days, male) 0.4
100144164 Antisense, RP_110421_01_A09, Mouse strain C57BL/6J (56 days, male) 0.1

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The Human Protein Atlas

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