MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:250.7 nTPM
HPA:250.7 nTPM
GTEx:214.7 nTPM
FANTOM5:338.5 Scaled Tags Per Million
Pig:62.3 nTPM
Mouse:48.4 nTPM
Allen mouse:2.4 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 250.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 217.7
1830 Male, age 51, unknown 250.4
2411 Female, age 72, unknown 247.7
1870 Female, age 42, unknown 238.6
1833 Male, age 53, unknown 236.7
2019 Male, age 18, unknown 227.4
2828 Female, age 72, unknown 205.6
2666 Male, age 74, left hemisphere 202.7
2586 Male, age 75, left hemisphere 196.1
1827 Male, age 72, unknown 190.8
2219 Male, age 76, both hemispheres 181.5
Dorsal raphe nucleus
nTPM: 202.6
2750 Male, age 76, both hemispheres 265.0
2016 Female, age 72, unknown 200.3
1828 Male, age 53, unknown 194.4
2298 Female, age 72, unknown 176.9
2047 Male, age 72, unknown 176.4
Inferior colliculus
nTPM: 178.3
1890 Male, age 53, unknown 183.7
1848 Female, age 42, unknown 178.2
2849 Male, age 72, unknown 177.2
2097 Female, age 72, unknown 174.0
Median raphe nucleus
nTPM: 192.5
2220 Male, age 76, midline 192.5
Pedunculopontine tegmental nucleus
nTPM: 202.5
2334 Male, age 80, both hemispheres 219.9
1921 Female, age 85, both hemispheres 195.8
2338 Male, age 61, both hemispheres 191.9
Periaquaductal grey, anterior
nTPM: 184.9
2502 Female, age 75, unknown 198.1
1947 Male, age 18, unknown 182.7
1795 Male, age 51, unknown 173.8
Periaquaductal grey, dorsal
nTPM: 176.1
2464 Female, age 72, unknown 202.1
1831 Male, age 72, unknown 181.1
1840 Male, age 53, unknown 161.0
2850 Male, age 76, both hemispheres 160.2
Periaquaductal grey, lateral
nTPM: 178.2
2053 Male, age 18, unknown 193.5
2272 Male, age 74, both hemispheres 180.0
2140 Male, age 76, both hemispheres 161.1
Pretectal area
nTPM: 184.6
2316 Male, age 76, right hemisphere 225.3
1815 Male, age 53, unknown 201.0
2407 Male, age 75, both hemispheres 198.6
2825 Male, age 18, unknown 192.8
1817 Female, age 42, unknown 186.9
2273 Male, age 74, both hemispheres 183.1
2224 Female, age 72, unknown 178.8
2007 Male, age 72, unknown 178.4
2667 Female, age 75, unknown 172.7
1816 Male, age 51, unknown 158.1
1944 Female, age 72, unknown 155.0
Red nucleus
nTPM: 250.7
2823 Male, age 76, right hemisphere 275.6
1865 Male, age 51, unknown 274.2
1904 Male, age 53, unknown 269.2
1821 Female, age 72, unknown 269.0
2503 Female, age 72, unknown 261.7
2769 Male, age 72, unknown 257.1
2227 Male, age 72, unknown 256.8
2588 Male, age 74, left hemisphere 253.1
1954 Female, age 42, unknown 239.3
2785 Male, age 18, unknown 234.0
2725 Female, age 75, unknown 213.2
2584 Male, age 75, left hemisphere 204.6
Substantia nigra
nTPM: 198.1
2590 Female, age 75, unknown 218.9
1851 Male, age 51, unknown 213.1
2409 Female, age 72, unknown 212.2
2699 Male, age 18, unknown 201.9
2241 Male, age 72, unknown 200.7
2583 Male, age 75, right hemisphere 196.4
1889 Female, age 72, unknown 192.2
2665 Male, age 74, both hemispheres 189.3
1941 Male, age 53, unknown 181.0
1916 Female, age 42, unknown 175.8
Superior colliculus
nTPM: 205.6
1913 Female, age 42, unknown 252.0
1995 Male, age 72, unknown 240.6
1895 Male, age 76, right hemisphere 223.2
2587 Male, age 74, left hemisphere 222.3
2668 Female, age 75, unknown 206.1
1839 Male, age 51, unknown 200.4
1796 Male, age 53, unknown 187.4
2664 Male, age 75, both hemispheres 182.6
2261 Male, age 18, unknown 172.2
2087 Female, age 72, unknown 169.6
Ventral tegmental area
nTPM: 208.5
2223 Female, age 72, unknown 229.5
2410 Female, age 72, unknown 226.8
2021 Male, age 53, unknown 208.2
1942 Male, age 51, unknown 201.4
1915 Female, age 42, unknown 195.4
2218 Male, age 76, both hemispheres 189.7

MIDBRAIN - GTEx RNA-seqi
Average nTPM 214.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 214.7
Samples: 139

Max nTPM: 594.9
Min nTPM: 65.0
Std nTPM: 87.6
Median nTPM: 187.8
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 594.9
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 467.1
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 449.8
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 408.7
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 389.7
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 377.8
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 372.5
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 359.9
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 353.5
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 352.7
GTEX-11UD1-0011-R2b-SM-5BC6O 40-49 years, female 339.0
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 338.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 338.5
FF:10158-103A5 76 years, female 338.5

MIDBRAIN - Pig RNA-seqi
Average nTPM 62.3
Pig sample Sample description nTPM
Midbrain
nTPM: 62.3
Samples: 4

Max nTPM: 111.5
Min nTPM: 29.7
Sample A Female 111.5
Sample B Female 65.5
Sample C Male 42.5
Sample D Male 29.7
Periaqueductal gray
nTPM: 46.3
Samples: 3

Max nTPM: 55.8
Min nTPM: 41.1
Sample B Female 55.8
Sample C Male 41.1
Sample D Male 42.0
Substantia nigra
nTPM: 57.0
Samples: 4

Max nTPM: 62.0
Min nTPM: 50.1
Sample A Female 60.4
Sample B Female 55.5
Sample C Male 50.1
Sample D Male 62.0
Superior colliculi
nTPM: 45.0
Samples: 4

Max nTPM: 50.5
Min nTPM: 35.3
Sample A Female 44.3
Sample B Female 35.3
Sample C Male 50.5
Sample D Male 49.8

MIDBRAIN - Mouse RNA-seqi
Average nTPM 48.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 48.4
Samples: 4

Max nTPM: 53.3
Min nTPM: 43.6
Sample A Male 50.3
Sample B Male 43.6
Sample C Female 46.4
Sample D Female 53.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 2.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.4
112650769 Antisense, RP_071128_04_A08, Mouse strain C57BL/6J (56 days, male) 3.7
2302 Antisense, RP_040604_02_B07, Mouse strain C57BL/6J (56 days, male) 1.2

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The Human Protein Atlas

The Human Protein Atlas project is funded
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