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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:241.2 nTPM
HPA:241.2 nTPM
GTEx:319.0 nTPM
FANTOM5:195.5 Scaled Tags Per Million
Pig:93.4 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max nTPM 241.2
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 212.5
1981 Female, age 72, midline 233.8
2816 Male, age 47, midline 212.3
2194 Female, age 79, both hemispheres 210.6
2048 Male, age 55, midline 208.9
2565 Male, age 75, midline 196.8
Cervical spinal cord, dorsal horn
nTPM: 218.6
2296 Male, age 66, both hemispheres 280.8
2173 Female, age 72, unknown 266.1
2069 Male, age 47, both hemispheres 215.4
1877 Male, age 55, unknown 206.0
2297 Male, age 75, both hemispheres 174.6
2721 Male, age 90, both hemispheres 169.0
Cervical spinal cord, ventral horn
nTPM: 241.2
2809 Male, age 90, both hemispheres 259.7
2480 Male, age 75, both hemispheres 250.6
2098 Female, age 72, unknown 246.0
2068 Male, age 55, unknown 234.6
2295 Male, age 66, both hemispheres 229.6
2820 Female, age 79, both hemispheres 226.4

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 319.0
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 319.0
Samples: 159

Max nTPM: 583.9
Min nTPM: 119.0
Std nTPM: 78.6
Median nTPM: 320.2
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 583.9
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 477.3
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 467.0
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 453.6
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 450.7
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 449.9
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 444.8
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 444.1
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 439.0
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 438.5
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 433.5
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 432.1
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 428.9
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 427.6
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 423.8
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 422.0
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 418.1
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 416.9
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 416.8
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 415.6
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 408.4
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 407.5
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 403.5
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 395.6
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 394.3
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 393.7
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 392.2
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 391.1
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 390.6
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 389.2
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 386.7
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 383.5
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 383.1
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 382.6
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 380.4
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 378.5
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 377.8
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 373.8
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 373.1
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 370.2
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 369.8
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 367.1
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 364.9
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 364.7
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 361.8
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 361.0
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 359.5
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 359.1
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 357.5
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 355.0
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 354.0
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 352.6
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 352.1
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 349.6
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 346.7
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 345.6
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 344.9
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 344.7
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 339.6
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 338.9
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 338.7
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 337.9
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 336.8
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 334.7
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 334.3
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 333.0
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 332.5
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 331.7
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 331.6
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 331.1
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 330.1
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 327.0
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 324.4
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 324.3
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 323.2
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 322.7
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 321.1
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 320.5
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 320.3
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 320.2
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 319.4
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 319.2
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 318.7
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 317.3
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 316.1
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 315.4
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 315.3
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 313.3
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 312.3
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 312.3
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 312.2
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 311.8
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 311.4
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 311.3
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 309.4
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 308.7
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 307.9
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 306.0
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 305.1
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 304.8
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 304.7
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 302.4
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 302.3
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 301.2
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 299.8
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 298.8
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 296.8
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 296.7
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 295.8
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 291.2
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 290.0
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 289.8
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 285.6
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 283.1
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 281.6
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 280.1
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 278.3
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 278.0
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 275.5
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 272.9
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 272.3
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 271.1
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 267.0
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 263.5
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 262.6
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 261.9
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 261.4
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 259.8
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 255.5
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 254.7
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 252.1
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 241.8
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 241.6
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 237.3
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 233.6
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 232.6
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 230.5
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 229.3
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 228.3
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 224.1
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 217.5
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 214.1
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 204.3
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 204.0
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 203.2
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 198.0
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 197.6
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 190.1
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 188.8
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 186.0
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 184.5
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 181.6
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 175.8
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 157.5
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 146.5
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 144.8
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 137.4
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 125.0
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 119.0
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 195.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 195.5
FF:10159-103A6 76 years, female 227.3
FF:10181-103D1 60 years, female 163.8

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 93.4
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 92.2
Samples: 4

Max nTPM: 112.6
Min nTPM: 65.8
Sample A Female 65.8
Sample B Female 112.6
Sample C Male 108.9
Sample D Male 81.4
Ventral spinal cord
nTPM: 93.4
Samples: 4

Max nTPM: 107.9
Min nTPM: 83.3
Sample A Female 83.3
Sample B Female 94.6
Sample C Male 87.8
Sample D Male 107.9

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