BASAL GANGLIA - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:5.0 nTPM
HPA:5.0 nTPM
GTEx:28.8 nTPM
FANTOM5:50.6 Scaled Tags Per Million
Pig:39.7 nTPM
Mouse:47.2 nTPM
Allen mouse:13.8 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

CAUDATE - Antibody stainingi
Antibody HPA051159
Glial cells Low
Neuronal cells Medium



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 5.0
Sample id Sample description nTPM
Caudate nucleus
nTPM: 1.5
1781 Male, age 74, unknown 5.9
2290 Female, age 72, unknown 4.1
2481 Female, age 94, left hemisphere 2.1
2289 Male, age 61, right hemisphere 0.2
2288 Male, age 75, left hemisphere 0.1
1854 Male, age 80, left hemisphere 0.0
1857 Female, age 85, left hemisphere 0.0
2846 Female, age 79, unknown 0.0
Claustrum
nTPM: 5.0
2491 Male, age 75, both hemispheres 8.0
2568 Male, age 61, both hemispheres 7.8
2196 Female, age 79, unknown 6.4
1956 Male, age 74, unknown 6.2
2198 Male, age 80, both hemispheres 6.2
2284 Female, age 91, both hemispheres 5.8
2645 Female, age 72, unknown 3.6
2292 Female, age 85, both hemispheres 0.9
2392 Female, age 94, both hemispheres 0.0
Globus pallidus, externus
nTPM: 4.4
2646 Male, age 61, right hemisphere 7.4
1996 Male, age 80, right hemisphere 5.8
2772 Female, age 79, unknown 5.7
2567 Female, age 72, unknown 2.9
2395 Male, age 75, both hemispheres 0.0
Globus pallidus, internus
nTPM: 2.0
2287 Male, age 75, right hemisphere 5.3
2778 Female, age 91, both hemispheres 4.6
2483 Female, age 94, right hemisphere 2.4
2566 Female, age 72, unknown 1.1
2037 Male, age 80, right hemisphere 0.9
1818 Male, age 74, unknown 0.0
2111 Female, age 85, right hemisphere 0.0
Nucleus accumbens
nTPM: 0.7
2698 Female, age 72, unknown 2.0
1783 Male, age 74, unknown 1.6
2732 Male, age 80, right hemisphere 1.2
1806 Female, age 85, left hemisphere 0.9
1856 Female, age 91, right hemisphere 0.0
2286 Male, age 75, left hemisphere 0.0
2391 Female, age 94, left hemisphere 0.0
2824 Male, age 61, right hemisphere 0.0
Nucleus basalis of Meynert
nTPM: 2.6
2569 Male, age 61, both hemispheres 10.7
2393 Male, age 80, right hemisphere 0.0
2484 Female, age 94, left hemisphere 0.0
2821 Male, age 75, both hemispheres 0.0
Nucleus of the diagonal band
nTPM: 3.6
2775 Male, age 80, right hemisphere 8.9
2195 Female, age 85, both hemispheres 4.7
1812 Female, age 91, both hemispheres 4.5
1979 Male, age 74, unknown 0.0
2029 Male, age 61, right hemisphere 0.0
Olfactory tubercle
nTPM: 2.6
2487 Female, age 94, left hemisphere 4.7
1846 Male, age 80, right hemisphere 3.8
1998 Female, age 91, both hemispheres 2.2
2856 Male, age 75, right hemisphere 0.0
Putamen
nTPM: 0.3
2647 Male, age 75, left hemisphere 2.7
1829 Male, age 74, unknown 0.0
1838 Male, age 80, right hemisphere 0.0
1937 Female, age 91, right hemisphere 0.0
2466 Female, age 79, unknown 0.0
2482 Female, age 94, left hemisphere 0.0
2489 Female, age 72, unknown 0.0
Septal nuclei
nTPM: 3.5
2031 Female, age 72, unknown 9.2
1960 Male, age 74, unknown 7.0
2059 Female, age 85, both hemispheres 6.5
2009 Female, age 91, both hemispheres 1.7
2629 Female, age 94, right hemisphere 0.5
2199 Male, age 80, right hemisphere 0.0
2394 Male, age 61, left hemisphere 0.0

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 28.8
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 25.2
Samples: 246

Max nTPM: 45.9
Min nTPM: 13.5
Std nTPM: 4.6
Median nTPM: 24.9
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 45.9
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 43.7
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 40.1
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 39.2
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 37.1
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 35.7
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 34.9
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 34.0
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 33.6
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 33.5
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 33.0
Show allShow less
Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 28.8
Samples: 246

Max nTPM: 41.2
Min nTPM: 11.9
Std nTPM: 5.3
Median nTPM: 29.3
GTEX-1CB4H-0011-R6b-SM-CKZNK 60-69 years, female 41.2
GTEX-147F4-0011-R6b-SM-5S2UP 50-59 years, male 41.0
GTEX-NL3H-0011-R6a-SM-2I3G8 60-69 years, male 40.4
GTEX-1EH9U-0011-R6a-SM-CJI2C 60-69 years, male 38.5
GTEX-13RTJ-0011-R6a-SM-5SI74 60-69 years, male 38.2
GTEX-14BIM-0011-R6b-SM-5S2VB 60-69 years, female 38.2
GTEX-1JMLX-0011-R6b-SM-EXUT9 50-59 years, male 38.2
GTEX-12ZZZ-0011-R6b-SM-5EQ5B 60-69 years, male 38.0
GTEX-1F75A-0011-R6b-SM-9QEHD 50-59 years, male 37.8
GTEX-WWYW-0011-R6A-SM-3NB3G 50-59 years, female 37.4
GTEX-N7MS-0011-R6a-SM-2HMJ4 60-69 years, male 37.3
Show allShow less
Brain - Putamen (basal ganglia)
Average nTPM: 24.7
Samples: 205

Max nTPM: 41.3
Min nTPM: 15.9
Std nTPM: 4.6
Median nTPM: 24.4
GTEX-1R46S-0011-R7b-SM-EXUTH 60-69 years, female 41.3
GTEX-1JJ6O-0011-R7b-SM-EXUTB 60-69 years, male 38.4
GTEX-1EH9U-0011-R7a-SM-9QEGU 60-69 years, male 37.7
GTEX-12ZZW-0011-R7a-SM-5DUWC 50-59 years, male 36.3
GTEX-1J8Q2-0011-R7a-SM-CKZPF 60-69 years, male 36.0
GTEX-1H1ZS-0011-R7a-SM-CL54P 70-79 years, male 35.8
GTEX-13CZV-0011-R7b-SM-5LZXH 60-69 years, male 35.7
GTEX-QDT8-0011-R7A-SM-32PKF 30-39 years, female 34.1
GTEX-WWYW-0011-R7A-SM-3NB3H 50-59 years, female 33.5
GTEX-12WSI-0011-R7b-SM-5GU78 50-59 years, male 33.3
GTEX-1HCU6-0011-R7b-SM-ARL77 60-69 years, female 32.7
Show allShow less

BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 50.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 41.4
FF:10164-103B2 76 years, female 41.4
Globus pallidus
Scaled Tags Per Million: 36.8
FF:10175-103C4 60 years, female 38.6
FF:10161-103A8 76 years, female 35.0
Nucleus accumbens
Scaled Tags Per Million: 45.9
FF:10037-101F1 23-56 years, mixed 45.9
Putamen
Scaled Tags Per Million: 50.6
FF:10176-103C5 60 years, female 50.6

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 39.7
Pig sample Sample description nTPM
Caudate
nTPM: 39.7
Samples: 4

Max nTPM: 50.0
Min nTPM: 23.8
Sample A Female 23.8
Sample B Female 50.0
Sample C Male 44.3
Sample D Male 40.5
Putamen
nTPM: 36.0
Samples: 4

Max nTPM: 45.0
Min nTPM: 22.7
Sample A Female 22.7
Sample B Female 43.0
Sample C Male 45.0
Sample D Male 33.3
Septum
nTPM: 22.5
Samples: 4

Max nTPM: 30.5
Min nTPM: 12.4
Sample A Female 29.3
Sample B Female 30.5
Sample C Male 17.8
Sample D Male 12.4
Ventral pallidum
nTPM: 27.8
Samples: 4

Max nTPM: 31.4
Min nTPM: 22.2
Sample A Female 28.1
Sample B Female 31.4
Sample C Male 22.2
Sample D Male 29.5

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 47.2
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 37.9
Samples: 4

Max nTPM: 39.7
Min nTPM: 35.5
Sample A Male 35.5
Sample B Male 38.5
Sample C Female 37.7
Sample D Female 39.7
Septum
nTPM: 47.2
Samples: 4

Max nTPM: 54.6
Min nTPM: 35.1
Sample A Male 35.1
Sample B Male 53.0
Sample C Female 46.2
Sample D Female 54.6
Ventral forebrain
nTPM: 31.5
Samples: 4

Max nTPM: 32.7
Min nTPM: 29.7
Sample A Male 29.7
Sample B Male 30.9
Sample C Female 32.5
Sample D Female 32.7

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 13.8
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 13.8
69288518 Antisense, RP_050407_01_A08, Mouse strain C57BL/6J (56 days, male) 13.8
Pallidum
Expression energy: 12.9
69288518 Antisense, RP_050407_01_A08, Mouse strain C57BL/6J (56 days, male) 12.9

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.