MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:120.6 nTPM
HPA:120.6 nTPM
GTEx:65.0 nTPM
FANTOM5:391.7 Scaled Tags Per Million
Pig:7.0 nTPM
Mouse:13.5 nTPM
Allen mouse:0.7 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 120.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 103.8
2411 Female, age 72, unknown 123.1
2586 Male, age 75, left hemisphere 118.0
1830 Male, age 51, unknown 115.2
1833 Male, age 53, unknown 107.6
1870 Female, age 42, unknown 107.3
2019 Male, age 18, unknown 105.0
2828 Female, age 72, unknown 102.1
2666 Male, age 74, left hemisphere 91.2
1827 Male, age 72, unknown 86.8
2219 Male, age 76, both hemispheres 82.0
Dorsal raphe nucleus
nTPM: 89.9
2750 Male, age 76, both hemispheres 131.9
2016 Female, age 72, unknown 83.8
1828 Male, age 53, unknown 82.3
2047 Male, age 72, unknown 81.0
2298 Female, age 72, unknown 70.7
Inferior colliculus
nTPM: 75.5
1848 Female, age 42, unknown 78.4
1890 Male, age 53, unknown 77.8
2849 Male, age 72, unknown 76.5
2097 Female, age 72, unknown 69.3
Median raphe nucleus
nTPM: 90.5
2220 Male, age 76, midline 90.5
Pedunculopontine tegmental nucleus
nTPM: 91.0
2334 Male, age 80, both hemispheres 102.0
1921 Female, age 85, both hemispheres 90.1
2338 Male, age 61, both hemispheres 80.8
Periaquaductal grey, anterior
nTPM: 80.6
2502 Female, age 75, unknown 86.8
1947 Male, age 18, unknown 79.2
1795 Male, age 51, unknown 75.7
Periaquaductal grey, dorsal
nTPM: 69.8
2464 Female, age 72, unknown 90.6
1831 Male, age 72, unknown 70.3
1840 Male, age 53, unknown 63.1
2850 Male, age 76, both hemispheres 55.4
Periaquaductal grey, lateral
nTPM: 72.6
2053 Male, age 18, unknown 82.4
2272 Male, age 74, both hemispheres 76.1
2140 Male, age 76, both hemispheres 59.3
Pretectal area
nTPM: 80.7
2316 Male, age 76, right hemisphere 105.4
2407 Male, age 75, both hemispheres 97.3
1815 Male, age 53, unknown 90.0
2825 Male, age 18, unknown 86.0
2007 Male, age 72, unknown 81.8
1817 Female, age 42, unknown 79.9
2224 Female, age 72, unknown 72.1
2273 Male, age 74, both hemispheres 71.9
2667 Female, age 75, unknown 68.9
1816 Male, age 51, unknown 67.3
1944 Female, age 72, unknown 67.3
Red nucleus
nTPM: 120.6
2823 Male, age 76, right hemisphere 130.2
1904 Male, age 53, unknown 129.9
2588 Male, age 74, left hemisphere 128.2
2584 Male, age 75, left hemisphere 125.6
2769 Male, age 72, unknown 125.0
2503 Female, age 72, unknown 124.7
2227 Male, age 72, unknown 124.2
1865 Male, age 51, unknown 123.9
2785 Male, age 18, unknown 119.1
1821 Female, age 72, unknown 112.9
1954 Female, age 42, unknown 102.8
2725 Female, age 75, unknown 101.1
Substantia nigra
nTPM: 82.3
2583 Male, age 75, right hemisphere 107.3
2590 Female, age 75, unknown 99.9
1851 Male, age 51, unknown 90.6
2409 Female, age 72, unknown 82.7
1889 Female, age 72, unknown 82.5
1941 Male, age 53, unknown 77.0
2699 Male, age 18, unknown 72.5
2241 Male, age 72, unknown 71.6
2665 Male, age 74, both hemispheres 71.6
1916 Female, age 42, unknown 67.8
Superior colliculus
nTPM: 94.5
1913 Female, age 42, unknown 122.1
1995 Male, age 72, unknown 115.6
2587 Male, age 74, left hemisphere 97.0
2668 Female, age 75, unknown 94.9
1839 Male, age 51, unknown 94.4
2664 Male, age 75, both hemispheres 91.3
1796 Male, age 53, unknown 88.7
1895 Male, age 76, right hemisphere 88.5
2261 Male, age 18, unknown 81.6
2087 Female, age 72, unknown 71.0
Ventral tegmental area
nTPM: 92.3
2223 Female, age 72, unknown 118.0
2410 Female, age 72, unknown 96.4
1942 Male, age 51, unknown 90.4
2021 Male, age 53, unknown 87.5
2218 Male, age 76, both hemispheres 81.6
1915 Female, age 42, unknown 79.7

MIDBRAIN - GTEx RNA-seqi
Average nTPM 65.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 65.0
Samples: 139

Max nTPM: 241.7
Min nTPM: 20.7
Std nTPM: 38.0
Median nTPM: 57.5
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 241.7
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 219.8
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 191.4
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 168.7
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 157.8
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 144.3
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 142.5
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 142.2
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 131.4
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 129.1
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 123.5
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 391.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 391.7
FF:10158-103A5 76 years, female 391.7

MIDBRAIN - Pig RNA-seqi
Average nTPM 7.0
Pig sample Sample description nTPM
Midbrain
nTPM: 5.9
Samples: 4

Max nTPM: 9.4
Min nTPM: 2.6
Sample A Female 2.6
Sample B Female 5.0
Sample C Male 9.4
Sample D Male 6.6
Periaqueductal gray
nTPM: 4.5
Samples: 3

Max nTPM: 6.1
Min nTPM: 3.4
Sample B Female 3.9
Sample C Male 6.1
Sample D Male 3.4
Substantia nigra
nTPM: 7.0
Samples: 4

Max nTPM: 9.7
Min nTPM: 2.6
Sample A Female 9.3
Sample B Female 6.2
Sample C Male 9.7
Sample D Male 2.6
Superior colliculi
nTPM: 7.0
Samples: 4

Max nTPM: 8.4
Min nTPM: 6.2
Sample A Female 7.0
Sample B Female 6.2
Sample C Male 8.4
Sample D Male 6.4

MIDBRAIN - Mouse RNA-seqi
Average nTPM 13.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 13.5
Samples: 4

Max nTPM: 16.8
Min nTPM: 10.7
Sample A Male 16.8
Sample B Male 12.0
Sample C Female 14.3
Sample D Female 10.7

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.7
68744887 Antisense, RP_050208_01_H01, Mouse strain C57BL/6J (56 days, male) 1.2
71064032 Antisense, RP_050725_03_C08, Mouse strain C57BL/6J (56 days, male) 0.2

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.