MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:106.3 nTPM
HPA:106.3 nTPM
GTEx:103.6 nTPM
FANTOM5:73.0 Scaled Tags Per Million
Pig:226.9 nTPM
Mouse:126.2 nTPM
Allen mouse:2.9 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 106.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 89.7
2586 Male, age 75, left hemisphere 145.8
2019 Male, age 18, unknown 102.6
2666 Male, age 74, left hemisphere 91.1
2828 Female, age 72, unknown 87.0
2219 Male, age 76, both hemispheres 85.6
2411 Female, age 72, unknown 79.4
1870 Female, age 42, unknown 77.6
1827 Male, age 72, unknown 77.3
1830 Male, age 51, unknown 76.4
1833 Male, age 53, unknown 73.8
Dorsal raphe nucleus
nTPM: 79.3
2047 Male, age 72, unknown 92.3
2750 Male, age 76, both hemispheres 90.6
1828 Male, age 53, unknown 76.2
2016 Female, age 72, unknown 69.2
2298 Female, age 72, unknown 68.1
Inferior colliculus
nTPM: 71.1
1890 Male, age 53, unknown 77.7
1848 Female, age 42, unknown 73.7
2097 Female, age 72, unknown 68.7
2849 Male, age 72, unknown 64.4
Median raphe nucleus
nTPM: 89.4
2220 Male, age 76, midline 89.4
Pedunculopontine tegmental nucleus
nTPM: 74.2
2334 Male, age 80, both hemispheres 82.9
1921 Female, age 85, both hemispheres 76.8
2338 Male, age 61, both hemispheres 63.0
Periaquaductal grey, anterior
nTPM: 82.6
1795 Male, age 51, unknown 83.6
1947 Male, age 18, unknown 83.6
2502 Female, age 75, unknown 80.6
Periaquaductal grey, dorsal
nTPM: 63.6
1831 Male, age 72, unknown 67.7
1840 Male, age 53, unknown 65.4
2464 Female, age 72, unknown 61.1
2850 Male, age 76, both hemispheres 60.2
Periaquaductal grey, lateral
nTPM: 57.0
2053 Male, age 18, unknown 60.6
2140 Male, age 76, both hemispheres 55.4
2272 Male, age 74, both hemispheres 55.0
Pretectal area
nTPM: 81.6
2007 Male, age 72, unknown 106.7
1817 Female, age 42, unknown 101.9
1944 Female, age 72, unknown 95.4
1815 Male, age 53, unknown 95.2
1816 Male, age 51, unknown 91.4
2407 Male, age 75, both hemispheres 87.7
2667 Female, age 75, unknown 76.7
2825 Male, age 18, unknown 66.4
2224 Female, age 72, unknown 62.5
2316 Male, age 76, right hemisphere 58.1
2273 Male, age 74, both hemispheres 56.0
Red nucleus
nTPM: 88.7
2584 Male, age 75, left hemisphere 123.3
2785 Male, age 18, unknown 101.7
2588 Male, age 74, left hemisphere 100.1
1821 Female, age 72, unknown 91.7
1904 Male, age 53, unknown 87.2
1865 Male, age 51, unknown 86.1
1954 Female, age 42, unknown 85.2
2769 Male, age 72, unknown 82.7
2503 Female, age 72, unknown 82.4
2227 Male, age 72, unknown 80.5
2725 Female, age 75, unknown 77.3
2823 Male, age 76, right hemisphere 66.8
Substantia nigra
nTPM: 106.3
2583 Male, age 75, right hemisphere 128.8
1851 Male, age 51, unknown 119.5
2665 Male, age 74, both hemispheres 119.4
1916 Female, age 42, unknown 119.0
1889 Female, age 72, unknown 101.1
2590 Female, age 75, unknown 100.8
1941 Male, age 53, unknown 97.7
2241 Male, age 72, unknown 94.8
2409 Female, age 72, unknown 91.0
2699 Male, age 18, unknown 90.6
Superior colliculus
nTPM: 79.4
2664 Male, age 75, both hemispheres 106.8
2668 Female, age 75, unknown 97.9
1796 Male, age 53, unknown 82.9
2087 Female, age 72, unknown 82.8
1995 Male, age 72, unknown 74.1
2261 Male, age 18, unknown 74.1
2587 Male, age 74, left hemisphere 73.8
1839 Male, age 51, unknown 71.2
1913 Female, age 42, unknown 67.3
1895 Male, age 76, right hemisphere 63.5
Ventral tegmental area
nTPM: 95.5
2223 Female, age 72, unknown 104.8
2410 Female, age 72, unknown 98.5
2218 Male, age 76, both hemispheres 96.7
1915 Female, age 42, unknown 93.5
1942 Male, age 51, unknown 92.9
2021 Male, age 53, unknown 86.9

MIDBRAIN - GTEx RNA-seqi
Average nTPM 103.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 103.6
Samples: 139

Max nTPM: 172.4
Min nTPM: 54.2
Std nTPM: 19.7
Median nTPM: 101.8
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 172.4
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 167.5
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 156.2
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 156.1
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 148.9
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 142.4
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 133.3
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 130.7
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 130.5
GTEX-1EU9M-0011-R2b-SM-9QEH7 60-69 years, male 130.4
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 129.3
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 73.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 73.0
FF:10158-103A5 76 years, female 73.0

MIDBRAIN - Pig RNA-seqi
Average nTPM 226.9
Pig sample Sample description nTPM
Midbrain
nTPM: 226.8
Samples: 4

Max nTPM: 281.3
Min nTPM: 187.3
Sample A Female 233.2
Sample B Female 187.3
Sample C Male 281.3
Sample D Male 205.5
Periaqueductal gray
nTPM: 145.1
Samples: 3

Max nTPM: 156.9
Min nTPM: 129.3
Sample B Female 156.9
Sample C Male 149.1
Sample D Male 129.3
Substantia nigra
nTPM: 210.6
Samples: 4

Max nTPM: 249.1
Min nTPM: 159.6
Sample A Female 249.1
Sample B Female 159.6
Sample C Male 247.2
Sample D Male 186.6
Superior colliculi
nTPM: 199.2
Samples: 4

Max nTPM: 227.5
Min nTPM: 138.1
Sample A Female 215.9
Sample B Female 138.1
Sample C Male 227.5
Sample D Male 215.1

MIDBRAIN - Mouse RNA-seqi
Average nTPM 126.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 126.2
Samples: 4

Max nTPM: 131.9
Min nTPM: 123.2
Sample A Male 125.9
Sample B Male 123.2
Sample C Female 123.7
Sample D Female 131.9

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 2.9
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.9
71764320 Antisense, RP_050921_03_E08, Mouse strain C57BL/6J (56 days, male) 2.9

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.