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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:1119.2 nTPM
HPA:1119.2 nTPM
GTEx:704.3 nTPM
FANTOM5:662.8 Scaled Tags Per Million
Mouse:475.2 nTPM

AMYGDALA - HPA Brain RNA-seq
Max nTPM 1119.2
Sample id Sample description nTPM
Amygdala
nTPM: 1101.1
2695 Female, age 67, right hemisphere 1160.9
1987 Female, age 91, left hemisphere 1104.5
2514 Male, age 75, right hemisphere 1100.6
2517 Female, age 94, left hemisphere 1088.9
2814 Male, age 76, right hemisphere 1050.4
Basal amygdala
nTPM: 1064.1
2827 Female, age 67, right hemisphere 1171.6
2110 Male, age 80, left hemisphere 1076.1
2609 Male, age 75, right hemisphere 1059.3
2685 Female, age 94, left hemisphere 1051.5
1955 Male, age 76, both hemispheres 1020.6
2243 Female, age 91, right hemisphere 1005.8
Central amygdala
nTPM: 1091.6
2826 Female, age 94, left hemisphere 1260.3
2515 Male, age 75, right hemisphere 1103.8
1905 Male, age 76, both hemispheres 1051.2
2239 Male, age 80, left hemisphere 1035.2
2701 Female, age 91, right hemisphere 1007.6
Corticomedial amygdala
nTPM: 1038.6
2535 Female, age 67, right hemisphere 1076.4
2428 Male, age 75, right hemisphere 1071.5
2829 Male, age 80, left hemisphere 1049.1
2429 Female, age 94, left hemisphere 1013.2
2242 Female, age 91, right hemisphere 1013.1
2240 Male, age 76, both hemispheres 1008.4
Lateral amygdala
nTPM: 1119.2
2830 Female, age 67, right hemisphere 1262.9
2516 Male, age 75, right hemisphere 1155.4
2534 Female, age 94, left hemisphere 1153.9
2256 Male, age 80, left hemisphere 1069.6
1883 Male, age 76, both hemispheres 1037.3
2255 Female, age 91, right hemisphere 1036.1
Stria terminalis, bed nucleus
nTPM: 1006.5
1974 Female, age 91, both hemispheres 1048.3
2201 Male, age 74, unknown 988.6
2486 Female, age 94, both hemispheres 982.6

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 704.3
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 704.3
Samples: 152

Max nTPM: 1740.4
Min nTPM: 303.4
Std nTPM: 271.6
Median nTPM: 642.6
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 1740.4
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 1517.4
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 1405.6
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 1361.0
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 1353.3
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 1338.3
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 1327.6
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 1310.9
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 1310.2
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 1289.8
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 1238.1
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 1228.6
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 1167.2
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 1164.5
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 1161.7
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 1154.0
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 1144.9
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 1105.1
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 1095.6
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 1039.3
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 1037.1
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 963.5
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 958.9
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 951.0
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 913.5
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 870.6
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 869.1
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 862.9
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 845.1
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 834.9
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 834.6
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 832.1
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 831.5
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 829.0
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 827.4
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 820.2
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 819.1
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 815.6
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 813.1
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 811.1
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 808.7
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 769.7
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 768.4
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 768.3
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 767.5
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 765.9
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 754.2
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 750.6
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 748.8
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 747.2
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 739.8
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 739.2
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 734.5
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 733.5
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 730.6
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 730.1
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 726.6
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 725.2
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 722.3
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 716.1
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 713.7
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 699.8
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 695.0
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 690.4
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 688.9
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 679.7
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 677.2
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 673.4
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 671.3
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 668.1
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 665.6
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 659.0
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 658.7
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 657.8
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 649.4
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 645.4
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 639.7
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 639.1
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 627.6
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 626.0
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 622.9
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 620.8
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 620.6
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 614.5
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 613.0
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 612.9
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 611.0
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 607.9
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 605.6
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 602.9
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 601.6
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 597.7
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 595.9
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 593.9
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 592.3
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 592.0
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 591.3
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 587.7
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 579.1
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 568.6
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 562.0
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 557.2
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 555.1
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 549.3
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 547.9
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 543.6
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 542.0
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 540.7
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 540.2
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 531.9
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 523.9
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 519.5
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 510.2
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 508.7
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 507.4
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 507.1
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 505.1
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 504.5
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 504.0
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 503.5
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 502.3
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 499.5
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 496.7
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 484.2
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 482.5
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 482.3
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 480.7
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 476.6
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 472.4
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 457.4
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 453.0
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 444.4
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 442.5
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 440.7
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 430.5
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 426.2
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 419.0
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 408.5
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 408.4
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 407.5
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 397.3
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 393.6
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 388.4
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 380.7
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 367.2
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 355.5
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 351.9
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 345.7
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 342.7
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 327.6
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 325.0
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 303.4
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 662.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 662.8
FF:10151-102I7 76 years, female 662.8

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 475.2
Mouse sample Sample description nTPM
Amygdala
nTPM: 475.2
Samples: 4

Max nTPM: 559.4
Min nTPM: 440.9
Sample A Male 449.2
Sample B Male 440.9
Sample C Female 559.4
Sample D Female 451.4

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